BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0004.p         (150 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3689 [K] COG0789 Predicted transcriptional regulators Pae Pseu...   164   9e-41
RSp0320 [K] COG0789 Predicted transcriptional regulators Rso Ral...   135   3e-32
HI1623 [K] COG0789 Predicted transcriptional regulators Hin Haem...   116   2e-26
SMc00109 [K] COG0789 Predicted transcriptional regulators Sme Si...   103   1e-22
BMEI0054 [K] COG0789 Predicted transcriptional regulators Bme Br...    99   3e-21

>PA3689 [K] COG0789 Predicted transcriptional regulators Pae Pseudomonas
           aeruginosa
          Length = 156

 Score =  164 bits (414), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 79/127 (62%), Positives = 96/127 (75%)

Query: 4   LKIGELAARTDCPVETIRYYEREALLPAPTRSQGNYRLYGDRHVERLQFIRHCRSLDMTL 63
           +KIGELA RT CPVETIRYYERE LLP P RS+GNYR Y   HVERL FIRHCRSLDMT 
Sbjct: 1   MKIGELAKRTGCPVETIRYYEREGLLPEPARSEGNYRQYTLAHVERLSFIRHCRSLDMTQ 60

Query: 64  DEVRSLLQFRDAPEENCGEVNALLDKHIGHVAQRIAELKKLQAQLKSLRAQCDTAQATRD 123
           +E+R+LL  RD PE +CG  N L+D+H+ HV  RIAEL+ L+ QL+ L ++C  A  ++ 
Sbjct: 61  EEIRTLLALRDRPEADCGTANRLIDEHLHHVEVRIAELQALREQLRDLGSRCTVAGNSQA 120

Query: 124 CGILQGL 130
           CGIL+ L
Sbjct: 121 CGILREL 127


>RSp0320 [K] COG0789 Predicted transcriptional regulators Rso Ralstonia
           solanacearum
          Length = 170

 Score =  135 bits (340), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 62/127 (48%), Positives = 88/127 (69%)

Query: 4   LKIGELAARTDCPVETIRYYEREALLPAPTRSQGNYRLYGDRHVERLQFIRHCRSLDMTL 63
           +KIGELA RT   +ETIR+YE + LLP P R+  NYR+Y   H E+L FI  CRSLDM  
Sbjct: 13  MKIGELAQRTGVSIETIRFYEAQGLLPPPARAANNYRVYTPEHAEQLAFIAKCRSLDMAH 72

Query: 64  DEVRSLLQFRDAPEENCGEVNALLDKHIGHVAQRIAELKKLQAQLKSLRAQCDTAQATRD 123
            E+R L++ +  P+ +C E+N LLD+H+ HV  RIAEL +L+ Q++++  +C TA +  +
Sbjct: 73  AEIRRLMELQANPQASCKEINRLLDEHLRHVEARIAELTELKRQIEAIGQRCTTAASVAE 132

Query: 124 CGILQGL 130
           CG+LQ L
Sbjct: 133 CGVLQSL 139


>HI1623 [K] COG0789 Predicted transcriptional regulators Hin Haemophilus
           influenzae
          Length = 135

 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/111 (48%), Positives = 77/111 (69%)

Query: 4   LKIGELAARTDCPVETIRYYEREALLPAPTRSQGNYRLYGDRHVERLQFIRHCRSLDMTL 63
           +KIG LA    C VETIRYYE++ L+P P R+ GN+R Y + H++RL FI +CR+LD++L
Sbjct: 1   MKIGALAKALGCTVETIRYYEQQGLIPPPKRTSGNFRQYNEEHLQRLSFICNCRNLDISL 60

Query: 64  DEVRSLLQFRDAPEENCGEVNALLDKHIGHVAQRIAELKKLQAQLKSLRAQ 114
            E++SLL   +A ++   E+N +LDKHI  VA RI EL  L+ +L  LR +
Sbjct: 61  SEIKSLLNLENASKQQAEEINRVLDKHIKEVATRIHELAHLRMKLIELREK 111


>SMc00109 [K] COG0789 Predicted transcriptional regulators Sme Sinorhizobium
           meliloti
          Length = 155

 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 81/129 (62%), Gaps = 1/129 (0%)

Query: 6   IGELAARTDCPVETIRYYEREALLPAPTRSQGNYRLYGDRHVERLQFIRHCRSLDMTLDE 65
           IG+L+ RT   + TIRYYE+  LL AP RS+GN R Y  R +E L FIRH R L ++++ 
Sbjct: 22  IGDLSRRTGVKIPTIRYYEQMGLLAAPERSEGNQRRYEKRELETLAFIRHARDLGLSIEA 81

Query: 66  VRSLLQFRDAPEENCGEVNALLDKHIGHVAQRIAELKKLQAQLKSLRAQCDTAQATRDCG 125
           +R LL   + PE  CGE + +  +H+  V ++IA+L++L+ +L+ + A C       DC 
Sbjct: 82  IRDLLALSEHPERPCGEADRIATEHLASVREKIAQLRRLEHELERIVA-CHGDHTIGDCY 140

Query: 126 ILQGLANMS 134
           +++ LA+ S
Sbjct: 141 VIRALADHS 149


>BMEI0054 [K] COG0789 Predicted transcriptional regulators Bme Brucella
           melitensis
          Length = 140

 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 78/133 (58%), Gaps = 3/133 (2%)

Query: 1   MDALKIGELAARTDCPVETIRYYEREALLPAPTRSQGNYRLYGDRHVERLQFIRHCRSLD 60
           M ++ IGE +  +   V TIRYYE+  LLP P R+QGN RLY  R ++RL FIRH R L 
Sbjct: 1   MVSIPIGEASKASGVKVPTIRYYEQIGLLPVPPRTQGNRRLYDARDIQRLLFIRHARDLG 60

Query: 61  MTLDEVRSLLQFRDAPEENCGEVNALLDKHIGHVAQRIAELKKLQAQLKSLRAQCDTAQA 120
             +D +R+LL  +D P+++C   +A+    +  V  RIA L+ L+ +L  LR    TA  
Sbjct: 61  FAVDSIRTLLDLQDKPDQSCAVADAIARARLTEVELRIARLQSLKTEL--LRMLDSTAHG 118

Query: 121 TRD-CGILQGLAN 132
             D C +++ L N
Sbjct: 119 RVDQCRVIEILGN 131