BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0030.p         (94 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2722 [E] COG0069 Glutamate synthase domain 2 Rso Ralstonia so...   119   2e-27
PA3602 [E] COG0069 Glutamate synthase domain 2 Pae Pseudomonas a...    92   2e-19

>RSc2722 [E] COG0069 Glutamate synthase domain 2 Rso Ralstonia solanacearum
          Length = 532

 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/87 (62%), Positives = 69/87 (79%)

Query: 1   VPDKAERVYRFHQSTLHALQELVQAAGLPHTSALRPFHIVHRINDHEIQLLSEMLKYLEP 60
           VPDKA+RV+++H  TLHAL EL QAAGL H    R  HIV R++ +E+QLLS +LKYLEP
Sbjct: 443 VPDKAQRVHQYHAHTLHALLELTQAAGLRHPVDFRAHHIVRRVSGNEVQLLSTLLKYLEP 502

Query: 61  GDLITGNYRYQVYEKYWPIARAESFHP 87
           GDL+ G YRYQ+YE+YWP+A+A+ F P
Sbjct: 503 GDLLAGRYRYQLYERYWPMAQADRFDP 529


>PA3602 [E] COG0069 Glutamate synthase domain 2 Pae Pseudomonas aeruginosa
          Length = 536

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 60/85 (70%)

Query: 1   VPDKAERVYRFHQSTLHALQELVQAAGLPHTSALRPFHIVHRINDHEIQLLSEMLKYLEP 60
           VPDKAERV  FH++TL  L E++ AAGL H S L   H+V RI D EI+L S++  +L+P
Sbjct: 448 VPDKAERVRNFHRNTLKGLAEMLAAAGLEHPSQLEAKHLVRRITDTEIRLFSQLHYFLKP 507

Query: 61  GDLITGNYRYQVYEKYWPIARAESF 85
           G+L++G    + YE+ W +ARA+SF
Sbjct: 508 GELLSGKIEGEFYERMWNMARADSF 532