BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0028.p         (141 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2722 [E] COG0069 Glutamate synthase domain 2 Rso Ralstonia so...    85   4e-17
PA3602 [E] COG0069 Glutamate synthase domain 2 Pae Pseudomonas a...    70   2e-12

>RSc2722 [E] COG0069 Glutamate synthase domain 2 Rso Ralstonia
          solanacearum
          Length = 532

 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/92 (51%), Positives = 58/92 (63%), Gaps = 8/92 (8%)

Query: 1  MILWFMIFLTLALAILASGHVVSWWWAAAPLALSMIGVRDIVQRRHAVLRNYPLMGHFRF 60
          ++L F++    ALA       + W  AA P  L+M+GVRD+ Q RH+VLRNYPL GH RF
Sbjct: 12 VVLLFVVTAGFALA-----GRLHWACAAIPGMLAMLGVRDLTQPRHSVLRNYPLWGHLRF 66

Query: 61 LFEAIRPEIRQYFFEGENXISAPRPTSTAARS 92
          L E IRPEIRQYF E +   +  RP S A RS
Sbjct: 67 LLEFIRPEIRQYFVEDD---TDERPFSRAQRS 95


>PA3602 [E] COG0069 Glutamate synthase domain 2 Pae Pseudomonas
          aeruginosa
          Length = 536

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 5/74 (6%)

Query: 7  IFLTLALAILASGHVVSWWWAAAPL--ALSMIGVRDIVQRRHAVLRNYPLMGHFRFLFEA 64
          +F  L+L  L S     W W    L  ALS++G+ D++Q  HAV RNYP++G+ R+L E 
Sbjct: 17 LFTLLSLPFLGS---TEWLWPFTLLGVALSLLGLFDLIQTPHAVRRNYPILGNIRYLVEG 73

Query: 65 IRPEIRQYFFEGEN 78
          IRPEIRQY  E + 
Sbjct: 74 IRPEIRQYLLEADG 87