BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0012.p         (155 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0711 [K] COG0781 Transcription termination factor Rso Ralston...   189   2e-48
PA4052 [K] COG0781 Transcription termination factor Pae Pseudomo...   135   4e-32
NMB0683 [K] COG0781 Transcription termination factor Nme Neisser...   130   1e-30
NMA0885 [K] COG0781 Transcription termination factor NmA Neisser...   129   2e-30
PM0730 [K] COG0781 Transcription termination factor Pmu Pasteure...   112   4e-25

>RSc0711 [K] COG0781 Transcription termination factor Rso Ralstonia
           solanacearum
          Length = 161

 Score =  189 bits (479), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/153 (58%), Positives = 115/153 (75%), Gaps = 4/153 (2%)

Query: 6   QHANPSKNRTP----RHRAREFALQGLYQWLLNNEDAGAIEAHIREAHGFDKADAEHFDV 61
           Q  +P+K + P    R RARE ALQGLYQWLLN  D G +EAH+ +A GF+KAD  HFD 
Sbjct: 9   QDNSPAKPKAPPKSARRRARELALQGLYQWLLNRNDPGVVEAHLHDAQGFNKADRAHFDA 68

Query: 62  LLYGAIKQAPELRTDLAPLIDRSITELSPVEHAALLIGAFELKNNLEIPYRVVINEAVEL 121
           LL+GAI++   L     P +DR + ELSPVE AALL+GA+EL + ++IPY+VVINEAVEL
Sbjct: 69  LLHGAIREEATLTESFTPFLDRPVAELSPVERAALLVGAYELVHCVDIPYKVVINEAVEL 128

Query: 122 TKSFGGIDGHKYVNGVLDRFAAKAREVEVSAGR 154
            K+FGG++G+KYVNGVLD+ AA+ R VEV+A R
Sbjct: 129 AKTFGGVEGYKYVNGVLDKLAAQVRAVEVAARR 161


>PA4052 [K] COG0781 Transcription termination factor Pae Pseudomonas
           aeruginosa
          Length = 159

 Score =  135 bits (339), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 63/149 (42%), Positives = 92/149 (61%), Gaps = 1/149 (0%)

Query: 8   ANPSKNRTP-RHRAREFALQGLYQWLLNNEDAGAIEAHIREAHGFDKADAEHFDVLLYGA 66
           A P K +T  R +AR  A+Q LY W +  +    IEA  R  + F + D  +F  +L+G 
Sbjct: 11  AKPPKGKTAARRKARSLAVQALYSWQIAGQPLHEIEAQFRTDNDFSEVDGAYFHEILHGV 70

Query: 67  IKQAPELRTDLAPLIDRSITELSPVEHAALLIGAFELKNNLEIPYRVVINEAVELTKSFG 126
            +Q  EL +   P +DR + E+ PVE A L +  +EL+N +++PY+VVINE +EL K+FG
Sbjct: 71  PRQKSELDSTFEPCLDRPLAEIDPVELAILRLSTYELRNRIDVPYKVVINEGIELAKTFG 130

Query: 127 GIDGHKYVNGVLDRFAAKAREVEVSAGRR 155
             DGHK+VNGVLD+ A + R  E+  G+R
Sbjct: 131 ATDGHKFVNGVLDKLAPRLRAAELRGGKR 159


>NMB0683 [K] COG0781 Transcription termination factor Nme Neisseria
           meningitidis MC58
          Length = 141

 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/133 (48%), Positives = 85/133 (63%)

Query: 14  RTPRHRAREFALQGLYQWLLNNEDAGAIEAHIREAHGFDKADAEHFDVLLYGAIKQAPEL 73
           +T R R+RE A+Q +YQ L+N   A  I  +IRE   F KAD E F+ L +G    A E 
Sbjct: 2   KTARRRSRELAVQAVYQSLINRTAAPEIAKNIREMSDFAKADEELFNKLFFGTQTNAAEY 61

Query: 74  RTDLAPLIDRSITELSPVEHAALLIGAFELKNNLEIPYRVVINEAVELTKSFGGIDGHKY 133
              + PL+DR   +L+P+E A LL    EL    E PY V+INEA+E+TK+FGG DGHK+
Sbjct: 62  IRQIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTDGHKF 121

Query: 134 VNGVLDRFAAKAR 146
           VNG+LD+ AA+ R
Sbjct: 122 VNGILDKLAAQIR 134


>NMA0885 [K] COG0781 Transcription termination factor NmA Neisseria
           meningitidis Z2491
          Length = 141

 Score =  129 bits (325), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 86/136 (63%)

Query: 14  RTPRHRAREFALQGLYQWLLNNEDAGAIEAHIREAHGFDKADAEHFDVLLYGAIKQAPEL 73
           +T R R+RE A+Q +YQ L+N   A  I  +IRE   F KAD E F+ L +G    A E 
Sbjct: 2   KTARRRSRELAVQAVYQSLINRTAAPEIAKNIREMPDFAKADEELFNKLFFGTQTNAAEY 61

Query: 74  RTDLAPLIDRSITELSPVEHAALLIGAFELKNNLEIPYRVVINEAVELTKSFGGIDGHKY 133
              + PL+DR   +L+P+E A LL    EL    E PY V+INEA+E+TK+FGG DGHK+
Sbjct: 62  IRQIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTDGHKF 121

Query: 134 VNGVLDRFAAKAREVE 149
           VNG+LD+ AA+ R  E
Sbjct: 122 VNGILDKLAAQIRPDE 137


>PM0730 [K] COG0781 Transcription termination factor Pmu Pasteurella
           multocida
          Length = 144

 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 74/131 (56%)

Query: 12  KNRTPRHRAREFALQGLYQWLLNNEDAGAIEAHIREAHGFDKADAEHFDVLLYGAIKQAP 71
           K  +PR RARE A+Q LY W ++      IE +          D  +F  L     +   
Sbjct: 8   KKISPRRRARECAVQALYSWYVSQNSPAEIELNFMAEQDLKGVDTAYFRRLFRQTAENVD 67

Query: 72  ELRTDLAPLIDRSITELSPVEHAALLIGAFELKNNLEIPYRVVINEAVELTKSFGGIDGH 131
            +   + P +DR ++EL P+E A L +  +ELK  L++PY+VVINEA+E+ K FG  D H
Sbjct: 68  AVDNIMIPYLDREVSELDPIEKAILRLAVYELKFELDVPYKVVINEAIEVAKVFGAEDSH 127

Query: 132 KYVNGVLDRFA 142
           KYVNGVLD+ A
Sbjct: 128 KYVNGVLDKVA 138