BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0319.p         (162 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2054 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Rso Ral...   296   9e-81
NMB0251 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Nme Nei...   246   2e-65
NMA0008 [C] COG1143 Formate hydrogenlyase subunit 6/NADH NmA Nei...   246   2e-65
XF0313 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Xfa Xyle...   227   1e-59
BMEI1150 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Bme Br...   201   8e-52

>RSc2054 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Rso Ralstonia
           solanacearum
          Length = 163

 Score =  296 bits (759), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 140/160 (87%), Positives = 153/160 (95%)

Query: 3   AIKDFFGSLMLRELFKGLALTGRYLFARKITIQFPEEKTPQSPRFRGLHALRRYPNGEER 62
           AIK+FF SL+L+ELFKGLALTGRYLFARKIT+ FPEEKTP SPRFRGLHALRRYPNGEER
Sbjct: 4   AIKEFFNSLLLKELFKGLALTGRYLFARKITVLFPEEKTPLSPRFRGLHALRRYPNGEER 63

Query: 63  CIACKLCEAVCPAMAITIESEQRDDGSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHI 122
           CIACKLCEAVCPA+AITIES+QRDDG+RRTTRYDIDLTKCIFCGFCEE+CPVD+IVETHI
Sbjct: 64  CIACKLCEAVCPALAITIESDQRDDGTRRTTRYDIDLTKCIFCGFCEEACPVDAIVETHI 123

Query: 123 LEYHGEKRGDLYYTKEMLLAVGDRYENEIAAARTADAAYR 162
           LEYHGEKRGDLY+TK+MLLAVGDR+E EIAA + ADA YR
Sbjct: 124 LEYHGEKRGDLYFTKDMLLAVGDRFEPEIAANKAADAKYR 163


>NMB0251 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Nme Neisseria
           meningitidis MC58
          Length = 159

 Score =  246 bits (627), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 115/159 (72%), Positives = 133/159 (83%)

Query: 4   IKDFFGSLMLRELFKGLALTGRYLFARKITIQFPEEKTPQSPRFRGLHALRRYPNGEERC 63
           + +   + +L EL KG+ +T +  FARK TI FPEEKTPQS RFRGLHA RRYPNGEERC
Sbjct: 1   MANLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERC 60

Query: 64  IACKLCEAVCPAMAITIESEQRDDGSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHIL 123
           IACKLCEAVCPAMAI IESE+R+DG+RRT RYDIDLTKCIFCGFCEE+CP D+IVETHI 
Sbjct: 61  IACKLCEAVCPAMAINIESEEREDGTRRTKRYDIDLTKCIFCGFCEEACPTDAIVETHIF 120

Query: 124 EYHGEKRGDLYYTKEMLLAVGDRYENEIAAARTADAAYR 162
           EYHGEK+GDL+ TK +LLA+GD+YE EIA  + ADA YR
Sbjct: 121 EYHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR 159


>NMA0008 [C] COG1143 Formate hydrogenlyase subunit 6/NADH NmA Neisseria
           meningitidis Z2491
          Length = 159

 Score =  246 bits (627), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 115/159 (72%), Positives = 133/159 (83%)

Query: 4   IKDFFGSLMLRELFKGLALTGRYLFARKITIQFPEEKTPQSPRFRGLHALRRYPNGEERC 63
           + +   + +L EL KG+ +T +  FARK TI FPEEKTPQS RFRGLHA RRYPNGEERC
Sbjct: 1   MANLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERC 60

Query: 64  IACKLCEAVCPAMAITIESEQRDDGSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHIL 123
           IACKLCEAVCPAMAI IESE+R+DG+RRT RYDIDLTKCIFCGFCEE+CP D+IVETHI 
Sbjct: 61  IACKLCEAVCPAMAINIESEEREDGTRRTKRYDIDLTKCIFCGFCEEACPTDAIVETHIF 120

Query: 124 EYHGEKRGDLYYTKEMLLAVGDRYENEIAAARTADAAYR 162
           EYHGEK+GDL+ TK +LLA+GD+YE EIA  + ADA YR
Sbjct: 121 EYHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR 159


>XF0313 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Xfa Xylella
           fastidiosa 9a5c
          Length = 163

 Score =  227 bits (578), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 118/162 (72%), Positives = 133/162 (82%)

Query: 1   MEAIKDFFGSLMLRELFKGLALTGRYLFARKITIQFPEEKTPQSPRFRGLHALRRYPNGE 60
           M  +  +F SL+L EL  GL LT +Y F  K T+ +P EK PQSPRFRGLHALRRYPNGE
Sbjct: 2   MNRVMHYFKSLLLLELLAGLWLTLKYTFRPKYTVLYPMEKFPQSPRFRGLHALRRYPNGE 61

Query: 61  ERCIACKLCEAVCPAMAITIESEQRDDGSRRTTRYDIDLTKCIFCGFCEESCPVDSIVET 120
           ERCIACKLCEAVCPA+AITI+S +R+DG+RRTTRYDIDL KCIFCGFCEESCPVDSIVET
Sbjct: 62  ERCIACKLCEAVCPALAITIDSAKREDGTRRTTRYDIDLFKCIFCGFCEESCPVDSIVET 121

Query: 121 HILEYHGEKRGDLYYTKEMLLAVGDRYENEIAAARTADAAYR 162
           HILEYH EKRG+   TK  LLA+GDR+E EIA  R ADAA+R
Sbjct: 122 HILEYHFEKRGENIVTKPQLLAIGDRFEAEIAERRAADAAFR 163


>BMEI1150 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Bme Brucella
           melitensis
          Length = 163

 Score =  201 bits (510), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 98/163 (60%), Positives = 118/163 (72%), Gaps = 1/163 (0%)

Query: 1   MEAIKDFFGSLMLRELFKGLALTGRYLFARKITIQFPEEKTPQSPRFRGLHALRRYPNGE 60
           M +I     SL+L+E     AL+ R  FA K T+ +P EK P SPRFRG HALRRYPNGE
Sbjct: 1   MASIAQAAKSLLLKEFASAFALSMRQFFAPKATLNYPHEKGPVSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAVCPAMAITIES-EQRDDGSRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119
           ERCIACKLCEA+CPA AITIE+  +R+DG+RRT RYDID+ KCI+CGFC+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120

Query: 120 THILEYHGEKRGDLYYTKEMLLAVGDRYENEIAAARTADAAYR 162
               E+  E R +LYY K+ LLA GD +E EIA     DA YR
Sbjct: 121 GPNFEFATETREELYYDKDKLLANGDHWEREIARNIAMDAPYR 163