BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0308.p (253 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2064 [G] COG0149 Triosephosphate isomerase Rso Ralstonia sola... 309 3e-84 PM1311 [G] COG0149 Triosephosphate isomerase Pmu Pasteurella mul... 243 4e-64 STM4081 [G] COG0149 Triosephosphate isomerase Sty Salmonella typ... 236 5e-62 XF0303 [G] COG0149 Triosephosphate isomerase Xfa Xylella fastidi... 233 4e-61 tpiA [G] COG0149 Triosephosphate isomerase Eco Escherichia coli K12 231 8e-61 >RSc2064 [G] COG0149 Triosephosphate isomerase Rso Ralstonia solanacearum Length = 248 Score = 309 bits (792), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 159/248 (64%), Positives = 186/248 (75%), Gaps = 3/248 (1%) Query: 2 RRKLVAGNWKMNGGLAANAALVADVKAGLAAVGANADVAVCVPAPYLAQVQAAVAGSALA 61 R KLV GNWK++G L NA L+ +KA A A +AVC P PYLAQ Q+ +AGS++A Sbjct: 4 RPKLVVGNWKLHGSLNGNAELLEKIKA---AGQTRAALAVCAPFPYLAQCQSVLAGSSVA 60 Query: 62 LGSQDVSAHASGAYTGEVSAVMLAEFGCKYAIVGHSERRAYHGENDAAVAAKTAAALKAG 121 G+QDVSA GA+TGEV+A ML+EFGC YAIVGHSERR YHGE DA VA K AL+ G Sbjct: 61 WGAQDVSAETRGAFTGEVAASMLSEFGCGYAIVGHSERRTYHGETDAQVAIKALRALEHG 120 Query: 122 LTPIVCVGETLAEREAGRTNAVVGGQLDVVLAALDASDVQKIVVAYEPVWAIGTGKTATP 181 +TPIVCVGETLA+REAG T VV QL+ VL +L + IVVAYEPVWAIGTGKTAT Sbjct: 121 ITPIVCVGETLAQREAGETELVVARQLEAVLESLSVEQLGHIVVAYEPVWAIGTGKTATS 180 Query: 182 DMAQDVHAMLRARLAAKNADAAVRVQILYGGSMKPDNAKELLAMSDIDGGLIGGAALKAA 241 + AQ VHA LR R+AA +A A R+ ILYGGS+KPDNA EL M+DIDGGLIGGA+LKA Sbjct: 181 EQAQAVHAFLRGRVAACDAGVAQRMPILYGGSVKPDNAAELFTMADIDGGLIGGASLKAE 240 Query: 242 DFLAIVQA 249 DFLAI +A Sbjct: 241 DFLAIGRA 248 >PM1311 [G] COG0149 Triosephosphate isomerase Pmu Pasteurella multocida Length = 261 Score = 243 bits (619), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 128/252 (50%), Positives = 163/252 (64%), Gaps = 7/252 (2%) Query: 2 RRKLVAGNWKMNGGLAANAALVADVKAGLAAVGANADVAVCVPAPYLAQVQAAV------ 55 RR LV GNWK+NG A AL+ D+K LA V DVA+ P YLA+ +AA+ Sbjct: 3 RRPLVMGNWKLNGSKAFTKALIEDLKTELAGV-EGCDVAIAPPVMYLAEAEAALKCSCSC 61 Query: 56 AGSALALGSQDVSAHASGAYTGEVSAVMLAEFGCKYAIVGHSERRAYHGENDAAVAAKTA 115 G A+ALG+Q+V + GA+TG++S ML +FG KY I+GHSERR YH E+D +A K A Sbjct: 62 GGKAIALGAQNVDVNVQGAFTGDISTEMLKDFGAKYIIIGHSERRTYHKESDEFIAKKFA 121 Query: 116 AALKAGLTPIVCVGETLAEREAGRTNAVVGGQLDVVLAALDASDVQKIVVAYEPVWAIGT 175 A +AGL P++C+GE+ AE EAG+T V Q+D VL L A V+AYEP+WAIGT Sbjct: 122 ALKQAGLVPVLCIGESEAENEAGKTEEVCARQIDAVLNTLGAEAFNGAVIAYEPIWAIGT 181 Query: 176 GKTATPDMAQDVHAMLRARLAAKNADAAVRVQILYGGSMKPDNAKELLAMSDIDGGLIGG 235 GK+ATP AQ VHA +R +A K+ A +V I YGGS+ NA EL DIDG L+GG Sbjct: 182 GKSATPAQAQAVHAFIRGHIAKKDNAVAEQVIIQYGGSVNDANAAELFTQPDIDGALVGG 241 Query: 236 AALKAADFLAIV 247 A+LKA F IV Sbjct: 242 ASLKAPAFAVIV 253 >STM4081 [G] COG0149 Triosephosphate isomerase Sty Salmonella typhimurium LT2 Length = 255 Score = 236 bits (601), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 126/251 (50%), Positives = 162/251 (64%), Gaps = 1/251 (0%) Query: 1 MRRKLVAGNWKMNGGLAANAALVADVKAGLAAVGANADVAVCVPAPYLAQVQAAVAGSAL 60 MR LV GNWK+NG LVA+++ L V A DVA+ P Y+ + A AGS + Sbjct: 1 MRHPLVMGNWKLNGSRHMVNELVANLRKELTGV-AGCDVAIAPPEMYIDLAKRAAAGSHI 59 Query: 61 ALGSQDVSAHASGAYTGEVSAVMLAEFGCKYAIVGHSERRAYHGENDAAVAAKTAAALKA 120 LG+Q+V + SGA+TGE SA ML + G +Y I+GHSERR YH E+D +A K A + Sbjct: 60 MLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQ 119 Query: 121 GLTPIVCVGETLAEREAGRTNAVVGGQLDVVLAALDASDVQKIVVAYEPVWAIGTGKTAT 180 GLTP++C+GET AE EAG+T V Q+D VL A+ + V+AYEPVWAIGTGK+AT Sbjct: 120 GLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSAT 179 Query: 181 PDMAQDVHAMLRARLAAKNADAAVRVQILYGGSMKPDNAKELLAMSDIDGGLIGGAALKA 240 P AQ VH +R +A +A A +V I YGGS+ NA EL A DIDG L+GGA+LKA Sbjct: 180 PAQAQAVHKFIRDHIAKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKA 239 Query: 241 ADFLAIVQAAQ 251 F IV+AA+ Sbjct: 240 DAFAVIVKAAE 250 >XF0303 [G] COG0149 Triosephosphate isomerase Xfa Xylella fastidiosa 9a5c Length = 249 Score = 233 bits (593), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 129/249 (51%), Positives = 164/249 (65%), Gaps = 2/249 (0%) Query: 1 MRRKLVAGNWKMNGGLAANAALVADVKAGLAAVGANADVAVCVPAPYLAQVQAAVAGSAL 60 MR K+VAGNWK++G A ALVA V AGL +G + V + P YL+ + G L Sbjct: 1 MRPKIVAGNWKLHGSHAFAQALVAQVAAGLPLLGVS--VIILPPLLYLSDLAQRFKGEGL 58 Query: 61 ALGSQDVSAHASGAYTGEVSAVMLAEFGCKYAIVGHSERRAYHGENDAAVAAKTAAALKA 120 A G+Q+VS H GAYTGEVSA M+A+ G Y +VGHSERR YH E+ VA K AAAL A Sbjct: 59 AFGAQNVSHHDKGAYTGEVSAAMVADVGAHYTLVGHSERREYHHEDSELVARKFAAALSA 118 Query: 121 GLTPIVCVGETLAEREAGRTNAVVGGQLDVVLAALDASDVQKIVVAYEPVWAIGTGKTAT 180 GL PI+CVGE+L +REAG+ + QL VLA + V + ++AYEPVWAIGTG+ A Sbjct: 119 GLRPILCVGESLPQREAGQAEVAIAMQLAPVLALVGPQGVARGLIAYEPVWAIGTGRHAD 178 Query: 181 PDMAQDVHAMLRARLAAKNADAAVRVQILYGGSMKPDNAKELLAMSDIDGGLIGGAALKA 240 P Q +HA +R +A ++A + ILYGG +KP NA EL + D+DGGLIGGA+L A Sbjct: 179 PSQVQAMHAFIRGEIARQDARIGDSLLILYGGGIKPCNAAELFSQQDVDGGLIGGASLVA 238 Query: 241 ADFLAIVQA 249 DFLAI +A Sbjct: 239 DDFLAIARA 247 >tpiA [G] COG0149 Triosephosphate isomerase Eco Escherichia coli K12 Length = 255 Score = 231 bits (590), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 123/251 (49%), Positives = 161/251 (64%), Gaps = 1/251 (0%) Query: 1 MRRKLVAGNWKMNGGLAANAALVADVKAGLAAVGANADVAVCVPAPYLAQVQAAVAGSAL 60 MR LV GNWK+NG LV++++ LA V A VA+ P Y+ + GS + Sbjct: 1 MRHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCA-VAIAPPEMYIDMAKREAEGSHI 59 Query: 61 ALGSQDVSAHASGAYTGEVSAVMLAEFGCKYAIVGHSERRAYHGENDAAVAAKTAAALKA 120 LG+Q+V + SGA+TGE SA ML + G +Y I+GHSERR YH E+D +A K A + Sbjct: 60 MLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQ 119 Query: 121 GLTPIVCVGETLAEREAGRTNAVVGGQLDVVLAALDASDVQKIVVAYEPVWAIGTGKTAT 180 GLTP++C+GET AE EAG+T V Q+D VL A+ + V+AYEPVWAIGTGK+AT Sbjct: 120 GLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSAT 179 Query: 181 PDMAQDVHAMLRARLAAKNADAAVRVQILYGGSMKPDNAKELLAMSDIDGGLIGGAALKA 240 P AQ VH +R +A +A+ A +V I YGGS+ NA EL A DIDG L+GGA+LKA Sbjct: 180 PAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKA 239 Query: 241 ADFLAIVQAAQ 251 F IV+AA+ Sbjct: 240 DAFAVIVKAAE 250