BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0306.p         (192 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1721 [K] COG5631 Predicted transcription regulator, contains ...   172   4e-43
BMEII0603 [K] COG5631 Predicted transcription regulator, contain...   159   3e-39
mlr3446 Non COG                                                        65   9e-11

>RSc1721 [K] COG5631 Predicted transcription regulator, contains HTH domain
           (MarR family) Rso Ralstonia solanacearum
          Length = 188

 Score =  172 bits (436), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 91/174 (52%), Positives = 123/174 (70%), Gaps = 1/174 (0%)

Query: 8   NTPEQAVTQKSPT-KIVSSNHLVSERSAELSELEYALIMAGNAFNRWMMRCMMAAGAKDM 66
           + PE A  +   +  IVSS HLVS RS ELSE E+AL  A NA++RW +RCM AAG +D+
Sbjct: 11  DLPEAAANEGGKSGAIVSSAHLVSARSPELSEFEFALNTAYNAYHRWCVRCMAAAGVRDL 70

Query: 67  TAIEVSLLHHVNHRERKKKLADICFVLNIEDTHVVTYALKKLVKAGYVKSEKAGKELLFS 126
           T ++V ++HHVNHR R K+LADICFVLN+EDTH+VTY+LKKL     V+  + GKE+ ++
Sbjct: 71  TFLDVLVVHHVNHRGRAKRLADICFVLNVEDTHLVTYSLKKLQALELVEGTRNGKEVTYT 130

Query: 127 TTDEGQQLCMRYKEVRERCLIEVQVDSGIQNQAIGEAAQLLRSASGLYDTAARA 180
           TT  G+  C RY+E+RE+CL       G +N  IGE A+L+R  +GLY+ AAR+
Sbjct: 131 TTATGETACARYREIREQCLTSNISPGGEENAEIGELARLMRVLTGLYEQAARS 184


>BMEII0603 [K] COG5631 Predicted transcription regulator, contains HTH domain
           (MarR family) Bme Brucella melitensis
          Length = 199

 Score =  159 bits (402), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 106/160 (66%)

Query: 21  KIVSSNHLVSERSAELSELEYALIMAGNAFNRWMMRCMMAAGAKDMTAIEVSLLHHVNHR 80
            IVSS HL    S  +SE+EY LI+A +AF+RWM+RCM AAG   ++ IE+ +LH + HR
Sbjct: 36  PIVSSAHLAEGGSPAMSEVEYGLILASHAFSRWMVRCMAAAGLPGLSPIEILILHSIRHR 95

Query: 81  ERKKKLADICFVLNIEDTHVVTYALKKLVKAGYVKSEKAGKELLFSTTDEGQQLCMRYKE 140
           +R+KKLADIC  L+IEDTH+ TYA++KL KAG + + KA KE     T +G + C  Y +
Sbjct: 96  DREKKLADICLALDIEDTHIATYAIRKLEKAGLLTTGKAAKEKTVKITAKGAEACAHYAQ 155

Query: 141 VRERCLIEVQVDSGIQNQAIGEAAQLLRSASGLYDTAARA 180
           +RER L++   ++    + + E A LLR  SG ++ A R+
Sbjct: 156 IRERLLVDSTANARPSEETLSELAALLRFMSGAFNQATRS 195


>mlr3446 Non COG
          Length = 233

 Score = 65.1 bits (157), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 1/142 (0%)

Query: 35  ELSELEYALIMAGNAFNRWMMRCMMAAGAKDMTAIEVSLLHHVNHRERKKKLADICFVLN 94
           +++E+EYAL+ +  AF  W   C+        +  E +LLH +   +R K + D+  + N
Sbjct: 64  DVTEVEYALMRSYEAFGHWQAECLATVIEFSASGPENALLHIIRMNDRPKSVRDLAQMTN 123

Query: 95  IEDTHVVTYALKKLVKAGYVKSEKAGKE-LLFSTTDEGQQLCMRYKEVRERCLIEVQVDS 153
            +D   + Y+L+KL+K G +    +G+  + +  T  G ++  RY ++R   LI+     
Sbjct: 124 RDDIPNIQYSLRKLLKGGLITRTGSGRAGVTYEVTPLGHRVTERYADIRSVLLIDAVTRI 183

Query: 154 GIQNQAIGEAAQLLRSASGLYD 175
                 + + A+ L   +G+Y+
Sbjct: 184 PEMADKLEDVARTLELMTGIYE 205