BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0305.p (219 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2171 [E] COG2049 Allophanate hydrolase subunit 1 Rso Ralstoni... 261 6e-70 ybgJ [E] COG2049 Allophanate hydrolase subunit 1 Eco Escherichia... 234 9e-62 ZybgJ [E] COG2049 Allophanate hydrolase subunit 1 EcZ Escherichi... 234 9e-62 ECs0736 [E] COG2049 Allophanate hydrolase subunit 1 Ecs Escheric... 234 9e-62 STM0712 [E] COG2049 Allophanate hydrolase subunit 1 Sty Salmonel... 231 1e-60 >RSc2171 [E] COG2049 Allophanate hydrolase subunit 1 Rso Ralstonia solanacearum Length = 215 Score = 261 bits (668), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 128/214 (59%), Positives = 160/214 (74%), Gaps = 1/214 (0%) Query: 4 IQPQLHFLGDGALLCNLPPPATLSHQQRIWSLADAAADWPEVAEVVPGMNNLTLILRRPV 63 +Q +H LG+ ALLC +PPPATL+ QQRIW++A A++W V +VVPGMNNLTL+ P Sbjct: 1 MQCTIHRLGELALLCEVPPPATLTCQQRIWAMASRASEWAGVIDVVPGMNNLTLVFG-PQ 59 Query: 64 ADMDAVSKRILGSWKHLDIGQLSGRDIDIPVVYGGAGGPDLDAIARHTGLSTAEVIRRHS 123 AD A++ + +W+ G+ IDI V YGG GPDL +A HTGLS AEV+RRH+ Sbjct: 60 ADAQALTALLREAWQESGALIADGKRIDIEVAYGGDDGPDLRDVAAHTGLSPAEVVRRHT 119 Query: 124 EGEYVVYFIGFMPGFAYMGGLDPQLATPRQDEPRLSIPAGSVGIGGEQTGIYPLASPGGW 183 EY+VYF+GF+PGFAYMGGLD LATPR+ EPR+++PAGSVGIGGEQTGIYP ASPGGW Sbjct: 120 APEYIVYFLGFLPGFAYMGGLDKSLATPRRAEPRMAVPAGSVGIGGEQTGIYPAASPGGW 179 Query: 184 QLLGRTALPLFDPTQNPPTLLRPGDRVRFTVERI 217 QLLGRT LF P ++PP LL PGDR+RF ++ Sbjct: 180 QLLGRTDAALFLPQRDPPALLAPGDRIRFVASKV 213 >ybgJ [E] COG2049 Allophanate hydrolase subunit 1 Eco Escherichia coli K12 Length = 218 Score = 234 bits (598), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 116/215 (53%), Positives = 153/215 (71%), Gaps = 2/215 (0%) Query: 3 MIQPQLHFLGDGALLCNLPPPATLSHQQRIWSLADAAADWPEVAEVVPGMNNLTLILRRP 62 M + + + +G+ A++ L PP TL+ Q+RIW LA D P V E +PGMNN+T+ILR P Sbjct: 1 MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNP 60 Query: 63 VA-DMDAVSKRILGSWKHLDIGQLSGRDIDIPVVYGGAGGPDLDAIARHTGLSTAEVIRR 121 + +DA+ +R+ W+ + + R I+IPVVYGGAGGPDL +A H GLS +V+ Sbjct: 61 ESLALDAI-ERLQRWWEESEALEPESRFIEIPVVYGGAGGPDLAVVAAHCGLSEKQVVEL 119 Query: 122 HSEGEYVVYFIGFMPGFAYMGGLDPQLATPRQDEPRLSIPAGSVGIGGEQTGIYPLASPG 181 HS EYVV+F+GF PGF Y+G L QL TPR+ EPRL +PAGSVGIGG QTG+YPLA+PG Sbjct: 120 HSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPAGSVGIGGPQTGVYPLATPG 179 Query: 182 GWQLLGRTALPLFDPTQNPPTLLRPGDRVRFTVER 216 GWQL+G T+L LFDP ++ P LLRPGD VRF ++ Sbjct: 180 GWQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQK 214 >ZybgJ [E] COG2049 Allophanate hydrolase subunit 1 EcZ Escherichia coli O157:H7 EDL933 Length = 218 Score = 234 bits (598), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 116/215 (53%), Positives = 153/215 (71%), Gaps = 2/215 (0%) Query: 3 MIQPQLHFLGDGALLCNLPPPATLSHQQRIWSLADAAADWPEVAEVVPGMNNLTLILRRP 62 M + + + +G+ A++ L PP TL+ Q+RIW LA D P V E +PGMNN+T+ILR P Sbjct: 1 MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNP 60 Query: 63 VA-DMDAVSKRILGSWKHLDIGQLSGRDIDIPVVYGGAGGPDLDAIARHTGLSTAEVIRR 121 + +DA+ +R+ W+ + + R I+IPVVYGGAGGPDL +A H GLS +V+ Sbjct: 61 ESLALDAI-ERLQRWWEESEALEPESRFIEIPVVYGGAGGPDLAVVAAHCGLSEKQVVEL 119 Query: 122 HSEGEYVVYFIGFMPGFAYMGGLDPQLATPRQDEPRLSIPAGSVGIGGEQTGIYPLASPG 181 HS EYVV+F+GF PGF Y+G L QL TPR+ EPRL +PAGSVGIGG QTG+YPLA+PG Sbjct: 120 HSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPAGSVGIGGPQTGVYPLATPG 179 Query: 182 GWQLLGRTALPLFDPTQNPPTLLRPGDRVRFTVER 216 GWQL+G T+L LFDP ++ P LLRPGD VRF ++ Sbjct: 180 GWQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQK 214 >ECs0736 [E] COG2049 Allophanate hydrolase subunit 1 Ecs Escherichia coli O157:H7 Length = 218 Score = 234 bits (598), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 116/215 (53%), Positives = 153/215 (71%), Gaps = 2/215 (0%) Query: 3 MIQPQLHFLGDGALLCNLPPPATLSHQQRIWSLADAAADWPEVAEVVPGMNNLTLILRRP 62 M + + + +G+ A++ L PP TL+ Q+RIW LA D P V E +PGMNN+T+ILR P Sbjct: 1 MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNP 60 Query: 63 VA-DMDAVSKRILGSWKHLDIGQLSGRDIDIPVVYGGAGGPDLDAIARHTGLSTAEVIRR 121 + +DA+ +R+ W+ + + R I+IPVVYGGAGGPDL +A H GLS +V+ Sbjct: 61 ESLALDAI-ERLQRWWEESEALEPESRFIEIPVVYGGAGGPDLAVVAAHCGLSEKQVVEL 119 Query: 122 HSEGEYVVYFIGFMPGFAYMGGLDPQLATPRQDEPRLSIPAGSVGIGGEQTGIYPLASPG 181 HS EYVV+F+GF PGF Y+G L QL TPR+ EPRL +PAGSVGIGG QTG+YPLA+PG Sbjct: 120 HSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPAGSVGIGGPQTGVYPLATPG 179 Query: 182 GWQLLGRTALPLFDPTQNPPTLLRPGDRVRFTVER 216 GWQL+G T+L LFDP ++ P LLRPGD VRF ++ Sbjct: 180 GWQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQK 214 >STM0712 [E] COG2049 Allophanate hydrolase subunit 1 Sty Salmonella typhimurium LT2 Length = 218 Score = 231 bits (588), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 113/215 (52%), Positives = 150/215 (69%), Gaps = 2/215 (0%) Query: 3 MIQPQLHFLGDGALLCNLPPPATLSHQQRIWSLADAAADWPEVAEVVPGMNNLTLILRRP 62 M + + + LG+ A++ L PP TL+ Q+RIW L D P V E +PGMNN+T+ILR P Sbjct: 1 MQRARCYLLGETAVVLELEPPITLASQKRIWRLTQRLVDMPNVVEAIPGMNNITVILREP 60 Query: 63 -VADMDAVSKRILGSWKHLDIGQLSGRDIDIPVVYGGAGGPDLDAIARHTGLSTAEVIRR 121 +DA+ +R+ W+ + + R ++IPV+YGGAGGPDL A+ARH+GLS +V+ Sbjct: 61 QTLALDAI-ERLQRWWEESEALEPDSRSVEIPVIYGGAGGPDLAAVARHSGLSEKQVVEL 119 Query: 122 HSEGEYVVYFIGFMPGFAYMGGLDPQLATPRQDEPRLSIPAGSVGIGGEQTGIYPLASPG 181 H+ EYVV+F+GF PGF Y+G L L PR+ EPRL +PAGSVGIGG QTGIYPL++PG Sbjct: 120 HASVEYVVWFLGFQPGFPYLGNLPEPLHMPRRAEPRLQVPAGSVGIGGAQTGIYPLSTPG 179 Query: 182 GWQLLGRTALPLFDPTQNPPTLLRPGDRVRFTVER 216 GWQL+G T L LFDP + P LLRPGD VRF ++ Sbjct: 180 GWQLIGLTPLKLFDPMRETPVLLRPGDSVRFVPQK 214