BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0297.p         (89 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2069 [J] COG0184 Ribosomal protein S15P/S13E Rso Ralstonia so...   130   9e-31
YPO3493 [J] COG0184 Ribosomal protein S15P/S13E Ype Yersinia pestis   120   7e-28
VC0646 [J] COG0184 Ribosomal protein S15P/S13E Vch Vibrio cholerae    120   1e-27
STM3283 [J] COG0184 Ribosomal protein S15P/S13E Sty Salmonella t...   116   1e-26
rpsO [J] COG0184 Ribosomal protein S15P/S13E Eco Escherichia col...   116   1e-26

>RSc2069 [J] COG0184 Ribosomal protein S15P/S13E Rso Ralstonia
          solanacearum
          Length = 89

 Score =  130 bits (326), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 71/89 (79%)

Query: 1  MSIEKTAKAAIITDNARGQNDTGSPEVQVALLTARINDLNGHFKEHSKDHHSRRGLIKMV 60
          MS+    K  ++   ARG NDTGSPEVQVALLTARIN+L  HFK H KDHHSRRGL+KMV
Sbjct: 1  MSVADINKQEVVKQFARGTNDTGSPEVQVALLTARINELTPHFKAHMKDHHSRRGLLKMV 60

Query: 61 NRRKSLLSYLKGKDADRYRALIEKLGLRK 89
          +RR+ LL YLK  DADRYR+LIEKLGLRK
Sbjct: 61 SRRRRLLDYLKKNDADRYRSLIEKLGLRK 89


>YPO3493 [J] COG0184 Ribosomal protein S15P/S13E Ype Yersinia pestis
          Length = 89

 Score =  120 bits (301), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 58/89 (65%), Positives = 69/89 (77%)

Query: 1  MSIEKTAKAAIITDNARGQNDTGSPEVQVALLTARINDLNGHFKEHSKDHHSRRGLIKMV 60
          MS+   AKA I+ D  RG NDTGS EVQVALLTA+IN L GHF EH KDHHSRRGL++MV
Sbjct: 1  MSLSVEAKAKIVADFGRGTNDTGSSEVQVALLTAQINHLQGHFSEHKKDHHSRRGLLRMV 60

Query: 61 NRRKSLLSYLKGKDADRYRALIEKLGLRK 89
          + R+ LL YLK +D  RY +LIE+LGLR+
Sbjct: 61 STRRKLLDYLKRQDVARYASLIERLGLRR 89


>VC0646 [J] COG0184 Ribosomal protein S15P/S13E Vch Vibrio cholerae
          Length = 89

 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 70/89 (78%)

Query: 1  MSIEKTAKAAIITDNARGQNDTGSPEVQVALLTARINDLNGHFKEHSKDHHSRRGLIKMV 60
          MS+    KAAI+ + AR +NDTGSPEVQ+ALLTA IN L GHF+ H  DHHSRRGL++MV
Sbjct: 1  MSLNAETKAAIVAEYARCENDTGSPEVQIALLTASINHLQGHFQAHKGDHHSRRGLLRMV 60

Query: 61 NRRKSLLSYLKGKDADRYRALIEKLGLRK 89
          + R+ LL YLKGKD  RY+ LI++LGLR+
Sbjct: 61 SSRRKLLDYLKGKDLSRYQDLIKRLGLRR 89


>STM3283 [J] COG0184 Ribosomal protein S15P/S13E Sty Salmonella
          typhimurium LT2
          Length = 89

 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 69/89 (77%)

Query: 1  MSIEKTAKAAIITDNARGQNDTGSPEVQVALLTARINDLNGHFKEHSKDHHSRRGLIKMV 60
          MS+   A A I+++  R  NDTGS +VQVALLTA+IN L GHF EH KDHHSRRGL++MV
Sbjct: 1  MSLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMV 60

Query: 61 NRRKSLLSYLKGKDADRYRALIEKLGLRK 89
          ++R+ LL YLK KD  RY ALIE+LGLR+
Sbjct: 61 SQRRKLLDYLKRKDVARYTALIERLGLRR 89


>rpsO [J] COG0184 Ribosomal protein S15P/S13E Eco Escherichia coli K12
          Length = 89

 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 68/89 (76%)

Query: 1  MSIEKTAKAAIITDNARGQNDTGSPEVQVALLTARINDLNGHFKEHSKDHHSRRGLIKMV 60
          MS+   A A I+++  R  NDTGS EVQVALLTA+IN L GHF EH KDHHSRRGL++MV
Sbjct: 1  MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMV 60

Query: 61 NRRKSLLSYLKGKDADRYRALIEKLGLRK 89
          ++R+ LL YLK KD  RY  LIE+LGLR+
Sbjct: 61 SQRRKLLDYLKRKDVARYTQLIERLGLRR 89