BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0287.p         (109 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr5485 [R] COG4976 Predicted methyltransferase (contains TPR re...    74   1e-13
AGc866 [R] COG4976 Predicted methyltransferase (contains TPR rep...    70   1e-12
SMc00134 [R] COG4976 Predicted methyltransferase (contains TPR r...    65   3e-11
BMEI0923 [R] COG4976 Predicted methyltransferase (contains TPR r...    64   9e-11
SMc02241 [R] COG4976 Predicted methyltransferase (contains TPR r...    61   8e-10

>mlr5485 [R] COG4976 Predicted methyltransferase (contains TPR repeat) Mlo
           Mesorhizobium loti
          Length = 284

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 57/100 (57%), Gaps = 4/100 (4%)

Query: 9   DLVLAADTLIYFGDLEKVFDAVASTLRSAGHFVFTVEAVMPEAGQVVGFQLHPSGRYRHG 68
           DLV +AD LIY G L+ +   VA  L   G F F++E +  +      F L PS RY H 
Sbjct: 185 DLVTSADVLIYIGALDGLVGTVAGLLAEGGLFAFSIETLAGDGD----FALQPSRRYAHS 240

Query: 69  TDYVMRCLAAAGLTLVSMTEATLREEIRQPVKGVLAVAQR 108
             YV R L A GL ++++   T+R++ R+PVKG+  VA +
Sbjct: 241 QPYVGRTLEAKGLAILALEPTTIRQDRREPVKGLGVVAWK 280


>AGc866 [R] COG4976 Predicted methyltransferase (contains TPR repeat) Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 314

 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 59/99 (59%), Gaps = 4/99 (4%)

Query: 9   DLVLAADTLIYFGDLEKVFDAVASTLRSAGHFVFTVEAVMPEAGQVVGFQLHPSGRYRHG 68
           DLV AAD ++Y G LE V   V++ L+ +G F F+VE    +AG   GF L  S RY H 
Sbjct: 217 DLVAAADVMMYLGSLETVMPLVSALLKPSGFFAFSVE----DAGDEQGFVLRESLRYAHS 272

Query: 69  TDYVMRCLAAAGLTLVSMTEATLREEIRQPVKGVLAVAQ 107
             YV+  L  +G + + + + T+R++  +P+ G+L +A+
Sbjct: 273 KSYVIDLLERSGFSPMEIRKTTIRKDAGKPLSGILFLAR 311


>SMc00134 [R] COG4976 Predicted methyltransferase (contains TPR repeat) Sme
           Sinorhizobium meliloti
          Length = 275

 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 54/104 (51%)

Query: 4   ESQAFDLVLAADTLIYFGDLEKVFDAVASTLRSAGHFVFTVEAVMPEAGQVVGFQLHPSG 63
           + + FDL+ A D L Y G LE +F      +   G  +F+ E++  E     GF + P  
Sbjct: 169 DDEPFDLIAATDVLPYIGALEPLFFGAVDNMVPGGLLIFSSESLPDETPAGQGFAVGPHQ 228

Query: 64  RYRHGTDYVMRCLAAAGLTLVSMTEATLREEIRQPVKGVLAVAQ 107
           R+ H   Y+   LAA G  +V +T+ T+R E  +P+ G L +A+
Sbjct: 229 RFAHSETYLRERLAATGFEIVDITDITVRMEEGEPIAGQLVIAR 272


>BMEI0923 [R] COG4976 Predicted methyltransferase (contains TPR repeat) Bme
           Brucella melitensis
          Length = 276

 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 54/107 (50%)

Query: 2   AAESQAFDLVLAADTLIYFGDLEKVFDAVASTLRSAGHFVFTVEAVMPEAGQVVGFQLHP 61
           + E + +DL++A D L Y G+LE+ F  VA  L S GHF F+ E +         F +  
Sbjct: 169 STEEENWDLIVATDVLPYMGELERFFAGVAEHLNSGGHFGFSSETLDDNRLAGRAFVVGD 228

Query: 62  SGRYRHGTDYVMRCLAAAGLTLVSMTEATLREEIRQPVKGVLAVAQR 108
             R+ H   YV   L + G+  +   + T+R E   PV G L +A+R
Sbjct: 229 YQRFAHAQSYVRAMLDSHGMDCIRCEDITVRSEQGAPVPGHLYIARR 275


>SMc02241 [R] COG4976 Predicted methyltransferase (contains TPR repeat) Sme
           Sinorhizobium meliloti
          Length = 312

 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 4/107 (3%)

Query: 2   AAESQAFDLVLAADTLIYFGDLEKVFDAVASTLRSAGHFVFTVEAVMPEAGQVVGFQLHP 61
           A E +  DLV AAD L+Y G+LE VF      L   G F F+VE    +A    GF L P
Sbjct: 208 ALEQRRADLVSAADVLMYLGNLEGVFVIADRLLAPGGLFAFSVE----DACGADGFVLRP 263

Query: 62  SGRYRHGTDYVMRCLAAAGLTLVSMTEATLREEIRQPVKGVLAVAQR 108
           S RY H    +      +GL++++     +R +  +PV G+L +A +
Sbjct: 264 SLRYAHPEASIASLCKESGLSMIATERTIIRRDAGEPVAGILFLACK 310