BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0283.p (498 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0599 [KE] COG1167 Transcriptional regulators containing a DNA... 615 e-176 PA2032 [KE] COG1167 Transcriptional regulators containing a DNA-... 317 3e-86 PA4132 [KE] COG1167 Transcriptional regulators containing a DNA-... 315 2e-85 PA2897 [KE] COG1167 Transcriptional regulators containing a DNA-... 302 1e-81 yjiR [KE] COG1167 Transcriptional regulators containing a DNA-bi... 296 7e-80 >RSc0599 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Rso Ralstonia solanacearum Length = 504 Score = 615 bits (1587), Expect = e-176, Method: Compositional matrix adjust. Identities = 308/493 (62%), Positives = 366/493 (74%), Gaps = 5/493 (1%) Query: 8 AAAATSALTP---VAPP-ALPIYRRLAEHYLSAIQSGTLAPGDRMPSVRDLMRQHHVSLS 63 AA + LTP V PP A P+YR LA+HYL A++SG L PG RMPSVR LMR H VSLS Sbjct: 10 AAMSVIELTPAPAVRPPGAQPLYRMLADHYLGAMRSGVLTPGQRMPSVRTLMRTHSVSLS 69 Query: 64 TALQTLRHLEEGGWLEARPRSGYFVRQPRRATIRPVGEPNILAPLDPAQYVGIHEQVSDF 123 TALQ RHLE GWLEAR RSGYFVRQPRRA + P EP + P DPA YVG+H +VS Sbjct: 70 TALQVCRHLEAEGWLEARERSGYFVRQPRRALLAPAKEPEVATP-DPAAYVGVHARVSAI 128 Query: 124 IARRQLQAPTIDLSGMTCAPELYAVEALKNAAIRALREQPSLLTSAMPINGNATFRQVVA 183 IAR +DLSG + A LY L A + LR +P LLT A+ NG+ + VA Sbjct: 129 IARGLQARARVDLSGASGAATLYPSAVLNRIATQMLRARPLLLTQAVTPNGHPDLQSAVA 188 Query: 184 RRALNAGIRIGADDVVVTHGCIEALNLALRAVAQAGDTIAVESPTYFGLLQTLESLGMRA 243 RRAL G+++ DDVVVTHGCIEA+NLALRAVAQ GDT+AVESPTY+GLLQ LE LGMRA Sbjct: 189 RRALEMGVQVAPDDVVVTHGCIEAVNLALRAVAQPGDTVAVESPTYYGLLQVLECLGMRA 248 Query: 244 LEIPTSPQTGISIEALELAIQTYGNIKAVVVVPTLQNPLGCIMPDAHKERLVALCERCAV 303 +EIPTSP+TGIS+EALE+A+Q YGNI+AVVVVP LQNPLG IMPDA K RL A CE A+ Sbjct: 249 VEIPTSPRTGISLEALEMAVQAYGNIRAVVVVPNLQNPLGSIMPDAAKRRLAAFCEAHAI 308 Query: 304 PLIEDDAYSELADGDVAPSAAKVWDRSGNVIYCASLNKVLAPGMRLGWMTSGKWHERVKM 363 PLIEDD YS L DG A K WDR+GNVIYCASLNK +APG+RLGWMT G+W ERV+M Sbjct: 309 PLIEDDTYSALGDGPAPLKAIKAWDRTGNVIYCASLNKTIAPGLRLGWMTGGRWQERVEM 368 Query: 364 LKFAYTRANEEWTQITAANYMGSPAYDRHLRRLRGSLKEQREQMAEAIAGYFPPETRLSV 423 LKFA +R N+ W+Q+TAA + S AYDRH+R LR +L+EQRE+MAEAIAG FP TRLSV Sbjct: 369 LKFAQSRPNDSWSQVTAARLLASGAYDRHIRTLRQTLREQRERMAEAIAGCFPAGTRLSV 428 Query: 424 PNGGVGLWVELPRGLSSKAVFAAALNQGIGVSPGVIFSNSDRFDHYLRLCCGKPFTHELD 483 P GGV +WVELP +SS A+F AL GI ++PG +FSN +RFDHY R+C G P+T E++ Sbjct: 429 PAGGVAMWVELPASVSSMALFEMALAHGIRIAPGTMFSNLNRFDHYFRICFGLPYTAEVE 488 Query: 484 QALRKLGGIVERM 496 AL +LG + ++ Sbjct: 489 TALAQLGRLAHQL 501 >PA2032 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Pae Pseudomonas aeruginosa Length = 474 Score = 317 bits (813), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 191/474 (40%), Positives = 279/474 (58%), Gaps = 18/474 (3%) Query: 23 LPIYRRLAEHYLSAIQSGTLAPGDRMPSVRDLMRQHHVSLSTALQTLRHLEEGGWLEARP 82 + +Y +LAE S I+ G PGDR+PSVR + +H VSLST Q R LE+ G E RP Sbjct: 1 MTLYLQLAETLGSRIEQGLYRPGDRLPSVRAMSIEHGVSLSTVQQAYRLLEDRGLAEPRP 60 Query: 83 RSGYFVRQPRRATIRPVGEPNILAPLDPAQYVGIHEQVS-----DFIARRQLQAPTIDLS 137 +SGYFV R+ P P++ +Q+ + VS D + QL D+S Sbjct: 61 KSGYFVPAARQMPPLPAIARLAQRPVEISQWEQVLALVSTVPRPDVV---QLGRGMPDIS 117 Query: 138 GMTCAPELYAVEAL-KNAAIRALREQPSLLTSAMPINGNATFRQVVARRALNAGIRIGAD 196 + P ++ L ++A RAL + I+G+ R+ VAR +++G R A Sbjct: 118 SPSLKPLTRSLARLNRHADARAL--------AYDGIHGSPLLREEVARLLVDSGCRATAS 169 Query: 197 DVVVTHGCIEALNLALRAVAQAGDTIAVESPTYFGLLQTLESLGMRALEIPTSPQTGISI 256 DVV+T GC EAL++++RAV + GD +AVESP++ G +Q+L+ LGM+ALEIPT P GIS+ Sbjct: 170 DVVITTGCHEALSVSIRAVCEPGDIVAVESPSFHGAMQSLKGLGMKALEIPTDPVNGISL 229 Query: 257 EALELAIQTYGNIKAVVVVPTLQNPLGCIMPDAHKERLVALCERCAVPLIEDDAYSELAD 316 EALELA++ + IKA+ V P NPLG IMP++ K L+AL +R V +IEDD Y +LA Sbjct: 230 EALELALEQW-PIKAIQVTPNCNNPLGYIMPESRKRALLALAQRYDVAIIEDDVYGDLAY 288 Query: 317 GDVAPSAAKVWDRSGNVIYCASLNKVLAPGMRLGWMTSGKWHERVKMLKFAYTRANEEWT 376 P K +D G V+ C S +KVLAPG+R+GWM G++ +RV +K+ T A+ Sbjct: 289 TYPRPRTIKSYDDDGRVLLCGSFSKVLAPGLRIGWMVPGRYADRVLHMKYISTGASALQP 348 Query: 377 QITAANYMGSPAYDRHLRRLRGSLKEQREQMAEAIAGYFPPETRLSVPNGGVGLWVELPR 436 Q+ A ++G+ Y+ HLRR+R + R+ M + +A YFP TR S P GG LWVEL Sbjct: 349 QLAIAEFIGNGHYEPHLRRMRAQYQRGRDLMIDWVARYFPEGTRASRPQGGFLLWVELDE 408 Query: 437 GLSSKAVFAAALNQGIGVSPGVIFSNSDRFDHYLRLCCGKPFTHELDQALRKLG 490 + + A N+G+ V+ G IFS S ++ + LR+ T ++QA+R++G Sbjct: 409 AFDTLRLDKALRNRGVQVAVGCIFSASGKYRNCLRMNYAALPTPAIEQAVRRVG 462 >PA4132 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Pae Pseudomonas aeruginosa Length = 471 Score = 315 bits (806), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 179/474 (37%), Positives = 268/474 (56%), Gaps = 7/474 (1%) Query: 26 YRRLAEHYLSAIQSGTLAPGDRMPSVRDLMRQHHVSLSTALQTLRHLEEGGWLEARPRSG 85 Y + A+ I++G LAPG ++PSVR R + VS ST Q LE G + AR RSG Sbjct: 4 YEKFADEIAELIRTGVLAPGQKVPSVRHASRTYGVSASTVFQAYYLLESRGLIMARARSG 63 Query: 86 YFVRQPRRATIRPVGEPNILAPLDPAQYVGIHEQVSDFIARRQLQAP-TIDLSGMTCAPE 144 YFV Q RP+ EP I A V + E V F ++ P T+ +P+ Sbjct: 64 YFVCQ---HVQRPLPEPEISPRQADATEVDVSELV--FSVLSSIKDPDTVPFGSAFPSPQ 118 Query: 145 LYAVEALKNAAIRALREQPSLLTSAMPINGNATFRQVVARRALNAGIRIGADDVVVTHGC 204 L+ + L + A+R+ A GN R+ +A R + G+ + +++V+++G Sbjct: 119 LFPLPRLARSMAHAVRDMDPQSVVADMTPGNHGLRRQIALRYMVGGLLLPVEELVISNGA 178 Query: 205 IEALNLALRAVAQAGDTIAVESPTYFGLLQTLESLGMRALEIPTSPQTGISIEALELAIQ 264 +EALNL L+ V + GD +A+E+P ++ LQ LE L ++A+EIP P+ GI +E L +++ Sbjct: 179 LEALNLCLQVVTRPGDLVAIEAPAFYATLQVLERLKLKAVEIPVHPREGIDLEVLADSLE 238 Query: 265 TYGNIKAVVVVPTLQNPLGCIMPDAHKERLVALCERCAVPLIEDDAYSELADGDVAPSAA 324 IKA + QNP+G M D K L L R VP+IEDD Y+EL G AP Sbjct: 239 RL-PIKACWFMSNFQNPMGASMDDEKKRALAELLARHQVPMIEDDVYAELYFGQQAPKPV 297 Query: 325 KVWDRSGNVIYCASLNKVLAPGMRLGWMTSGKWHERVKMLKFAYTRANEEWTQITAANYM 384 K +D+ G V++C+S +K LAPG R+GW+ G++ E+++ LK + + Q A+Y+ Sbjct: 298 KAYDQEGLVMHCSSFSKSLAPGYRVGWVAGGRYAEQIERLKLMTSLSASIPAQAAIADYL 357 Query: 385 GSPAYDRHLRRLRGSLKEQREQMAEAIAGYFPPETRLSVPNGGVGLWVELPRGLSSKAVF 444 YDRHLR+LR +L+ Q+ M A+A YFP +TR+S P+GG LW+ELP + S +F Sbjct: 358 QHGGYDRHLRKLRYALETQQNAMLAAVARYFPEQTRVSRPSGGYFLWLELPEAVDSLRLF 417 Query: 445 AAALNQGIGVSPGVIFSNSDRFDHYLRLCCGKPFTHELDQALRKLGGIVERMPG 498 AL QGI ++PG IFS + RF H RL G P++ ++A+ LG I + + G Sbjct: 418 QLALAQGISLAPGPIFSATRRFAHCARLNYGHPWSARQEKAMETLGRITQSLAG 471 >PA2897 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Pae Pseudomonas aeruginosa Length = 479 Score = 302 bits (773), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 171/469 (36%), Positives = 271/469 (57%), Gaps = 8/469 (1%) Query: 23 LPIYRRLAEHYLSAIQSGTLAPGDRMPSVRDLMRQHHVSLSTALQTLRHLEEGGWLEARP 82 L +Y+R+A+ I+ G PG+R+PSVR L Q +VS +T LQ LE+ G + ARP Sbjct: 4 LLLYQRIAQQLAEDIRRGVYQPGERVPSVRKLSTQLNVSHATVLQAYATLEDQGLIRARP 63 Query: 83 RSGYFV-RQPRRATIRPVGEPNILAPLDPAQYVGIHEQVSDFIARRQLQAPTIDLSGMTC 141 +SG++V R P A P P+I A ++ V ++ +A + + L Sbjct: 64 QSGFYVHRTP--ALTAPT--PDI-ARVERPGLVTRSSIINQVLAESRREG-VFPLGAAVP 117 Query: 142 APELYAVEALKNAAIRALREQPSLLTSAMPINGNATFRQVVARRALNAGIRIGADDVVVT 201 + V AL + R Q S M G R+ VA R +AG+ + V +T Sbjct: 118 HVDYLPVRALHQQLAKVTRFQSPRAFSYMFSPGFEPLRRQVAIRMRDAGVVVDPSQVTIT 177 Query: 202 HGCIEALNLALRAVAQAGDTIAVESPTYFGLLQTLESLGMRALEIPTSPQTGISIEALEL 261 HGC++A+++ALR + + GD IA ESP+Y+GLLQ + LG++ +EIP+ P+TGIS+EAL+L Sbjct: 178 HGCVDAIHMALRVLTRPGDLIATESPSYYGLLQLADVLGLKVIEIPSDPRTGISLEALQL 237 Query: 262 AIQTYGNIKAVVVVPTLQNPLGCIMPDAHKERLVALCERCAVPLIEDDAYSELADGDVAP 321 A + +IKA+V+ L NP G +P+ +++L+ L + ++EDD Y EL Sbjct: 238 AANQW-SIKALVLTARLSNPFGGTIPEDRQKQLLKLTAEHNIGVVEDDIYGELMFDQGQA 296 Query: 322 SAAKVWDRSGNVIYCASLNKVLAPGMRLGWMTSGKWHERVKMLKFAYTRANEEWTQITAA 381 + K DR G VIYC+S +K ++PG+R+GW+ + ++ E ++ L+ T + TQ+ A Sbjct: 297 RSLKSHDRDGRVIYCSSFSKTISPGVRIGWIIAERYQEEIRRLQTFTTHSACTVTQMGVA 356 Query: 382 NYMGSPAYDRHLRRLRGSLKEQREQMAEAIAGYFPPETRLSVPNGGVGLWVELPRGLSSK 441 Y+ + YDRHLR +R ++ A+ YFP T+++ P GG LWV LP +++K Sbjct: 357 AYLENGGYDRHLRYIRQEYRKNMTAYQLAVQQYFPEGTQMTRPKGGFILWVSLPAKVNTK 416 Query: 442 AVFAAALNQGIGVSPGVIFSNSDRFDHYLRLCCGKPFTHELDQALRKLG 490 + AL QGI ++PG+IFSN+++F++ LRL CG P+ E ++A+ LG Sbjct: 417 ELHVRALEQGISIAPGLIFSNTEQFNNCLRLTCGIPWNREAERAIMTLG 465 >yjiR [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Eco Escherichia coli K12 Length = 470 Score = 296 bits (758), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 265/472 (56%), Gaps = 10/472 (2%) Query: 26 YRRLAEHYLSAIQSGTLAPGDRMPSVRDLMRQHHVSLSTALQTLRHLEEGGWLEARPRSG 85 Y+ LA I+ G G+++PSVR L ++H VS+ST Q + LE + +PRSG Sbjct: 4 YQHLATLLAERIEQGLYRHGEKLPSVRSLSQEHGVSISTVQQAYQTLETMKLITPQPRSG 63 Query: 86 YFVRQPRRAT--IRPVGEPNILAPLDPAQYVGIHEQVSDFIARRQLQAPTIDLSGMTCAP 143 YFV Q R+A + P+ P + P++ Q+ +QV D + + + LS T Sbjct: 64 YFVAQ-RKAQPPVPPMTRP-VQRPVEITQW----DQVLDMLEAHS-DSSIVPLSKSTPDV 116 Query: 144 ELYAVEALKNAAIRALREQPSLLTSAMPINGNATFRQVVARRALNAGIRIGADDVVVTHG 203 E +++ L R ++ + + G R+ +AR L++G + ADD+++T G Sbjct: 117 EAPSLKPLWRELSRVVQHNLQTVLGYDLLAGQRVLREQIARLMLDSGSVVTADDIIITSG 176 Query: 204 CIEALNLALRAVAQAGDTIAVESPTYFGLLQTLESLGMRALEIPTSPQTGISIEALELAI 263 C +++LAL AV + GD +AVESP Y+G +Q L +G++ +EIPT P+TGIS+EALELA+ Sbjct: 177 CHNSMSLALMAVCKPGDIVAVESPCYYGSMQMLRGMGVKVIEIPTDPETGISVEALELAL 236 Query: 264 QTYGNIKAVVVVPTLQNPLGCIMPDAHKERLVALCERCAVPLIEDDAYSELADGDVAPSA 323 + + IK +++VP NPLG IMPDA K +++L +R + + EDD Y ELA P Sbjct: 237 EQW-PIKGIILVPNCNNPLGFIMPDARKRAVLSLAQRHDIVIFEDDVYGELATEYPRPRT 295 Query: 324 AKVWDRSGNVIYCASLNKVLAPGMRLGWMTSGKWHERVKMLKFAYTRANEEWTQITAANY 383 WD G V+ C+S +K +APG+R+GW+ G++H+++ +K+A + N TQ+ AA + Sbjct: 296 IHSWDIDGRVLLCSSFSKSIAPGLRVGWVAPGRYHDKLMHMKYAISSFNVPSTQMAAATF 355 Query: 384 MGSPAYDRHLRRLRGSLKEQREQMAEAIAGYFPPETRLSVPNGGVGLWVELPRGLSSKAV 443 + Y RH+RR+R + I YFP E ++ P GG LW+ELP + V Sbjct: 356 VLEGHYHRHIRRMRQIYQRNLALYTCWIREYFPCEICITRPKGGFLLWIELPEQVDMVCV 415 Query: 444 FAAALNQGIGVSPGVIFSNSDRFDHYLRLCCGKPFTHELDQALRKLGGIVER 495 I V+ G IFS S ++ + LR+ C P + +AL+++G V R Sbjct: 416 ARQLCRMKIQVAAGSIFSASGKYRNCLRINCALPLSETYREALKQIGEAVYR 467