BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0239.p         (143 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XF0240 [K] COG1733 Predicted transcriptional regulators Xfa Xyle...   114   5e-26
mll2818 [K] COG1733 Predicted transcriptional regulators Mlo Mes...   101   4e-22
AGc1731 [K] COG1733 Predicted transcriptional regulators Atu Agr...   100   7e-22
RSc2138 [K] COG1733 Predicted transcriptional regulators Rso Ral...   100   2e-21
CC1836 Non COG                                                         99   3e-21

>XF0240 [K] COG1733 Predicted transcriptional regulators Xfa Xylella
           fastidiosa 9a5c
          Length = 142

 Score =  114 bits (286), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 54/111 (48%), Positives = 73/111 (65%)

Query: 21  CPSRKALELVGSKWALLIFPALAAGPMRNSALLRKIEGISQKMLTQTLKELERNGLVTRC 80
           CP R  L+ +G KW+LLI   L  GP R SA+ R +  IS++MLTQTL+ LERNG++ R 
Sbjct: 24  CPVRDVLDHIGDKWSLLILLTLVPGPTRFSAIQRAVPDISKRMLTQTLRHLERNGMIGRT 83

Query: 81  NLETAAPHVEYELSPLGESLSDTLIALDNWAERHHADLQRAREQFDNEKTG 131
              T  P VEY L+PLGESL   ++ L  WA  HH +++RAR +FD+ + G
Sbjct: 84  VYPTKPPRVEYALAPLGESLLVPVMHLLKWASTHHDEVRRARNRFDHAQQG 134


>mll2818 [K] COG1733 Predicted transcriptional regulators Mlo Mesorhizobium
           loti
          Length = 132

 Score =  101 bits (252), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/108 (47%), Positives = 67/108 (62%)

Query: 15  DIYSLACPSRKALELVGSKWALLIFPALAAGPMRNSALLRKIEGISQKMLTQTLKELERN 74
           D +   CPS   LE++ SKW  L+  AL  G +RN  L RK+EGI+ KML QTL+ LER+
Sbjct: 12  DAFRRTCPSHTVLEMLASKWVYLVVCALRKGRLRNGELARKLEGITPKMLAQTLRVLERD 71

Query: 75  GLVTRCNLETAAPHVEYELSPLGESLSDTLIALDNWAERHHADLQRAR 122
           GLV R       P VEYEL+ LG++L   L  +  WAE+H  D++ AR
Sbjct: 72  GLVRREIFPVIPPRVEYELTELGQNLGGLLTQIRAWAEQHAPDIKDAR 119


>AGc1731 [K] COG1733 Predicted transcriptional regulators Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 190

 Score =  100 bits (250), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 74/112 (66%)

Query: 15  DIYSLACPSRKALELVGSKWALLIFPALAAGPMRNSALLRKIEGISQKMLTQTLKELERN 74
           D+Y   CP+R  L+ +  KWALLI   L    +R + L R+I+GISQK+L+QTLK+LER+
Sbjct: 74  DVYEDRCPTRMVLDRIADKWALLILDKLRVDAVRFNLLRREIKGISQKVLSQTLKKLERD 133

Query: 75  GLVTRCNLETAAPHVEYELSPLGESLSDTLIALDNWAERHHADLQRAREQFD 126
           GL++R    T    VEY L+PLG +L++T+ AL +WAE +   +  A+  +D
Sbjct: 134 GLISRQAFPTVPVTVEYSLTPLGRTLTETVAALAHWAEGNIEAVMAAQRAYD 185


>RSc2138 [K] COG1733 Predicted transcriptional regulators Rso Ralstonia
           solanacearum
          Length = 125

 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 75/121 (61%), Gaps = 4/121 (3%)

Query: 9   VEEPQTDIYSLACPSRKALELVGSKWALLIFPALAAGPMRNSALLRKIEGISQKMLTQTL 68
           V++P  + + +     + L+ VG KW +    AL+ GPMR +A++R I GIS +MLT TL
Sbjct: 5   VDDPYAEFHVVL----EVLDRVGDKWTVTAIGALSEGPMRFNAIMRAIRGISHRMLTLTL 60

Query: 69  KELERNGLVTRCNLETAAPHVEYELSPLGESLSDTLIALDNWAERHHADLQRAREQFDNE 128
           + LER+GLV+R    T  P VEYEL+ +G SL + L  L NWA  +  +++ AR  FD E
Sbjct: 61  RGLERDGLVSRTVYATVPPKVEYELTEVGRSLIEPLRTLANWALENRIEIEAARALFDTE 120

Query: 129 K 129
           K
Sbjct: 121 K 121


>CC1836 Non COG
          Length = 110

 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 66/102 (64%)

Query: 27  LELVGSKWALLIFPALAAGPMRNSALLRKIEGISQKMLTQTLKELERNGLVTRCNLETAA 86
           L+L+G KWA+LI   L  GP+R  +L+R+I GISQKMLTQTL++LE+NG V R +     
Sbjct: 2   LDLIGGKWAILILCCLQQGPVRTGSLMRQIGGISQKMLTQTLRDLEQNGFVERISYPEVP 61

Query: 87  PHVEYELSPLGESLSDTLIALDNWAERHHADLQRAREQFDNE 128
           P VEY L+ LG+SLS     L+ W   H+  +   R+Q  +E
Sbjct: 62  PRVEYRLTELGQSLSALARTLEQWVVAHYETILAHRDQRQDE 103