BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0232.p         (145 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1359 [T] COG0589 Universal stress protein UspA and related nu...   112   3e-25
AGc878 [T] COG0589 Universal stress protein UspA and related nuc...    82   5e-16
BMEI0102 [T] COG0589 Universal stress protein UspA and related n...    81   6e-16
RSp1159 [T] COG0589 Universal stress protein UspA and related nu...    80   2e-15
VNG1536C [T] COG0589 Universal stress protein UspA and related n...    74   7e-14

>RSc1359 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Rso Ralstonia solanacearum
          Length = 168

 Score =  112 bits (280), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/145 (41%), Positives = 89/145 (61%), Gaps = 1/145 (0%)

Query: 1   MLKKILLATDGSELSKRAVAAAVDFAASYGSKIVGLAVSEIFPSLIMPELGAGYDLQGVE 60
           M + IL+ TDGSELS++AVA A+DFA + G+++      E +P     E+      Q  +
Sbjct: 25  MFQHILIPTDGSELSRKAVAGALDFAKTLGARLTAYTCLEEYPYTPFSEIVVETP-QAFK 83

Query: 61  AEIFAQSKLNAGYIADCAKKAGADCEVHTVKGTHANEEILRFAKEYGCDSIFMASHGRKG 120
             + AQ+++    + D A+ AG DC+            I+  A+ +GCD IFMASHGR+G
Sbjct: 84  ERVEAQARVVLKDVEDTARAAGIDCDTDMSCFAVPYMGIIDAAERHGCDVIFMASHGRRG 143

Query: 121 LDKLMLGSETQKVLTYSKIPVLVFK 145
           L  L+LGSETQKVLT++ IPV+V++
Sbjct: 144 LAGLLLGSETQKVLTHTAIPVIVYR 168


>AGc878 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 160

 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 77/148 (52%), Gaps = 7/148 (4%)

Query: 1   MLKKILLATDGSELSKRAVAAAVDFAASYGSKIVGLAVSEIFPSLIMPELGAGYDLQGVE 60
           M K IL+ TDGS L++ A+      A   G+K+  + VSE F  +I  ++    D+  + 
Sbjct: 16  MFKHILIPTDGSPLAQIAIDQGFALAREAGAKVTVVTVSEPF-HVIASDV---EDIAAIA 71

Query: 61  AEIFAQSKLNAGYIADCAKKA---GADCEVHTVKGTHANEEILRFAKEYGCDSIFMASHG 117
            E F + +     + D    A   G DCE    +    +E I+  A   GCD I MASH 
Sbjct: 72  EEEFHRCEEAEHLLRDTQAHAAAMGLDCEALLARAGRPDEAIIEIADRTGCDLIAMASHR 131

Query: 118 RKGLDKLMLGSETQKVLTYSKIPVLVFK 145
           R+   +++LGS T KVL  SKIPVLV++
Sbjct: 132 RRSFIEMLLGSVTAKVLKNSKIPVLVYR 159


>BMEI0102 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Bme Brucella melitensis
          Length = 149

 Score = 81.3 bits (199), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 82/160 (51%), Gaps = 26/160 (16%)

Query: 1   MLKKILLATDGSELSKRAVAAAVDFAASYGSKIVGLAVSEIFPSLIMPELGAGYDLQGVE 60
           M K+IL+ATDGSEL+ + V   V  A   G+ +V ++V+E+ PS         Y +  V 
Sbjct: 1   MYKRILIATDGSELADKGVKQGVTLAKETGAGVVFVSVTELLPS---------YGI--VV 49

Query: 61  AEIFAQSKLNAGYIADCAKKAGAD---------------CEVHTVKGTHANEEILRFAKE 105
           A  +A S        +   KA AD                E   V+   A + I+  AK 
Sbjct: 50  AAEWASSPAAFQEYREAISKAAADILHKAKAEAEAAGINAETVHVENQSAAQGIVEAAKA 109

Query: 106 YGCDSIFMASHGRKGLDKLMLGSETQKVLTYSKIPVLVFK 145
             CD I +ASHGR+G++KL+LGS+  +VL+ S +PVLV K
Sbjct: 110 KDCDLIVIASHGRRGVNKLLLGSQAAEVLSLSTVPVLVIK 149


>RSp1159 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Rso Ralstonia solanacearum
          Length = 146

 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 82/149 (55%), Gaps = 7/149 (4%)

Query: 1   MLKKILLATDGSELSKRAVAAAVDFAASYGSKIVGLAVSEIFPSLIMPELGAG---YDLQ 57
           M   ILL TDGS    +A+  A+  A + G ++      E FPS+     GAG   Y   
Sbjct: 1   MFTHILLPTDGSSQCTKAIDGALKLAHAAGCRLTAYTCIEDFPSMAYSG-GAGECPYSHY 59

Query: 58  GVEAEIFAQSKLNAGYIADCAKKAGADCEVHTVKGTHANEEILRFAKEYGCDSIFMASHG 117
             + + +A+  ++   IA+ A++ G + +    +       IL  A+ + CD IFMASHG
Sbjct: 60  MEQVQGYAKDCIDR--IAERAREEGVEFDSDVTQFAEPYLGILDAARRHACDVIFMASHG 117

Query: 118 RKGLD-KLMLGSETQKVLTYSKIPVLVFK 145
            + L  +L++G+ET+KVLTY+ IPV+V++
Sbjct: 118 HRSLTGRLLIGNETRKVLTYAHIPVVVYR 146


>VNG1536C [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Hbs Halobacterium sp. NRC-1
          Length = 147

 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 4/143 (2%)

Query: 3   KKILLATDGSELSKRAVAAAVDFAASYGSKIVGLAVSEIFPSLIMPELGAGYDLQGVEAE 62
           ++IL+ TDGS  S+ AVA AVD A  + + +  L V +      +P + + +  + V A 
Sbjct: 5   ERILVPTDGSNASQDAVAHAVDLAVEHDATVHALYVVDTASYAGLP-MDSSW--ESVSAM 61

Query: 63  IFAQSKLNAGYIADCAKKAGADCEVHTVKGTHANEEILRFAKEYGCDSIFMASHGRKGLD 122
           + ++       +   A   G   E     G  A  EI+ +A   GCD I M +HGR G+D
Sbjct: 62  LSSEGTSALDTVTAAANDRGVATERELRDGNPA-MEIVTYADNAGCDLIVMGTHGRGGID 120

Query: 123 KLMLGSETQKVLTYSKIPVLVFK 145
           +L+LGS T+KV+  S +PVL   
Sbjct: 121 RLLLGSVTEKVVRSSSVPVLTVS 143