BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0225.p (554 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC0806 [MU] COG1538 Outer membrane protein Ccr Caulobacter vibri... 352 1e-96 PA0427 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 347 3e-95 RSp0817 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 339 1e-92 RSc0009 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 335 2e-91 STM0350 [MU] COG1538 Outer membrane protein Sty Salmonella typhi... 306 1e-82 >CC0806 [MU] COG1538 Outer membrane protein Ccr Caulobacter vibrioides Length = 467 Score = 352 bits (903), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 208/464 (44%), Positives = 286/464 (61%), Gaps = 4/464 (0%) Query: 1 VRSRLIMALAALQLGGCVSLAPDYIRPALPVPTHY--PNAAAALRESAEPIGWRSYFQDA 58 +R+ ++ +A+ +G C +LAP Y RP LPV + P AA SA + WR D Sbjct: 2 LRNFTLILVASTAVGAC-TLAPQYERPVLPVAQTWSTPAPEAATTVSAADLDWRQVLVDP 60 Query: 59 HLQSLIELALQNSQDLRLALARVDEARAAYGIEAAAQFPTVGAQAGLDRARVPGDLNLTG 118 LQ +++LALQ ++DLR+A+ +++ARA YG++ +A FP V R R P + TG Sbjct: 61 RLQGVVDLALQQNRDLRVAVLNIEKARAQYGVQRSALFPGVSGAVSEQRGRTPASTSPTG 120 Query: 119 KPLVSSQYQVGLGMAGWELDFWGRVRSLKDAALESYLASDAARRAVRIDLIAQVAITYLT 178 +P + + +G +ELD +GRVRSLKDAAL+SYLA++ R+VR+ LIA++A +LT Sbjct: 121 QPFETDVFNATIGFTAYELDLFGRVRSLKDAALQSYLATEQTSRSVRVSLIAEIANAWLT 180 Query: 179 LSELNERLFLAGQTLASRAESYRIFKRRVEVGSTSRLNLTQVAVLLTQAQSLVAQLEQER 238 L+ ERL LA TLA+R +S R+ ++RV+ G+ S L+L L A++ VA + Sbjct: 181 LAADQERLALAKTTLATREDSLRLVRQRVDGGAGSLLDLRNAETLAETARADVAVYTAQV 240 Query: 239 EMQIHRLALLVGTQLSEATLQQ-RLSEVEAPRRLRPGIPSDLLNNRPDIIAAEHQLRAAN 297 + L LL G L L RL L G+PSD+L RPD++AAE QL+AAN Sbjct: 241 AQDRNALTLLAGGDLPVDLLPPGRLDADSVLADLPAGLPSDVLARRPDVLAAERQLQAAN 300 Query: 298 ANIGAARAAFFPRIALTGSAGTASAELGGLFDSGSRAWTFSPGISLPLFDGGLRNSNLKL 357 ANIGAARAAFFPRI+LTGSAG+AS +L GLF SG+ W+F+P ISLP+F GG +NL + Sbjct: 301 ANIGAARAAFFPRISLTGSAGSASTDLDGLFKSGTSIWSFTPQISLPIFAGGANVANLNI 360 Query: 358 TEARRHIAVLNYEKAIQSAFRDVSDALSARVWLDYQVDIAAVTLEVQAERARLSNLRYDN 417 ++A R IAV YEK +Q+AFR+VSDALS R + ++ A+ RLS R D Sbjct: 361 SKADRDIAVATYEKTVQTAFREVSDALSVRATVADRLTAQERLTAAAADSTRLSQQRRDA 420 Query: 418 GSASFLEVLDAQRDLLVAQQQLVQLQRALAAGNVSLYAALGGAA 461 G S L +LDAQR L AQQ L+ + A A V+LY LGG A Sbjct: 421 GLDSALTLLDAQRSLYTAQQGLISARLAQATNLVTLYKTLGGGA 464 >PA0427 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 485 Score = 347 bits (891), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 210/472 (44%), Positives = 287/472 (60%), Gaps = 23/472 (4%) Query: 2 RSRLIMALAALQLGGCVSLAPDYIRPALPVPTHYP-------NAAAALRESAEPIGWRSY 54 RS L +A+AA+ L GC SL PDY RP PV YP N AA +A+ IGWR + Sbjct: 3 RSFLSLAVAAVVLSGC-SLIPDYQRPEAPVAAAYPQGQAYGQNTGAAAVPAAD-IGWREF 60 Query: 55 FQDAHLQSLIELALQNSQDLRLALARVDEARAAYGIEAAAQFPTVGAQAGLDRARVPGDL 114 F+D LQ LI +AL+N++DLR+A V+ RA Y I+ A FP +G R R+PGDL Sbjct: 61 FRDPQLQQLIGVALENNRDLRVAALNVEAFRAQYRIQRADLFPRIGVDGSGTRQRLPGDL 120 Query: 115 NLTGKPLVSSQYQVGLGMAGWELDFWGRVRSLKDAALESYLASDAARRAVRIDLIAQVAI 174 + TG P +SSQY V LG WELD +GR+RSL+D ALE YLA++ A+R+ + L+A VA Sbjct: 121 STTGSPAISSQYGVTLGTTAWELDLFGRLRSLRDQALEQYLATEQAQRSAQTTLVASVAT 180 Query: 175 TYLTLSELNERLFLAGQTLASRAESYRIFKRRVEVGSTSRLNLTQVAVLLTQAQSLVAQL 234 YLTL +L L TL + +S+ + +R +VG S L+L Q + A++ +AQ Sbjct: 181 AYLTLKADQAQLQLTKDTLGTYQKSFDLTQRSYDVGVASALDLRQAQTAVEGARATLAQY 240 Query: 235 EQEREMQIHRLALLVGTQLSEATL-------QQRLSEVEAPRRLRPGIPSDLLNNRPDII 287 + + L LL+G+ + A L Q L+EV A G+PSDLL RPDI+ Sbjct: 241 TRLVAQDQNALVLLLGSGIP-ANLPQGLGLDQTLLTEVPA------GLPSDLLQRRPDIL 293 Query: 288 AAEHQLRAANANIGAARAAFFPRIALTGSAGTASAELGGLFDSGSRAWTFSPGISLPLFD 347 AEHQL AANA+IGAARAAFFP I+LT +AGT S +L GLFD+GS +W F P I+LP+F Sbjct: 294 EAEHQLMAANASIGAARAAFFPSISLTANAGTMSRQLSGLFDAGSGSWLFQPSINLPIFT 353 Query: 348 GGLRNSNLKLTEARRHIAVLNYEKAIQSAFRDVSDALSARVWLDYQVDIAAVTLEVQAER 407 G ++L + ++ I V YEKAIQ+AF++V+D L+AR Q+ ++ E Sbjct: 354 AGSLRASLDYAKIQKDINVAQYEKAIQTAFQEVADGLAARGTFTEQLQAQRDLVKASDEY 413 Query: 408 ARLSNLRYDNGSASFLEVLDAQRDLLVAQQQLVQLQRALAAGNVSLYAALGG 459 +L++ RY G ++L +LDAQR L AQQQL+ + V+LY ALGG Sbjct: 414 YQLADKRYRTGVDNYLTLLDAQRSLFTAQQQLITDRLNQLTSEVNLYKALGG 465 >RSp0817 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 491 Score = 339 bits (869), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 193/420 (45%), Positives = 262/420 (62%), Gaps = 13/420 (3%) Query: 49 IGWRSYFQDAHLQSLIELALQNSQDLRLALARVDEARAAYGIEAAAQFPTVGAQAGLDRA 108 IGWR F D LQ +I+LAL N++DLR+A+ +++ARA Y ++ AA FPTV A + Sbjct: 57 IGWRDVFTDPSLQRVIDLALANNRDLRVAVLNLEKARAQYRVQDAALFPTVKASGSESAS 116 Query: 109 RVPGDLNLTGKPLVSSQYQVGLGMAGWELDFWGRVRSLKDAALESYLASDAARRAVRIDL 168 R P L+ TG+P+VS Y LG + +ELD +GRVRSL ALE YLA+ ARR+ +I L Sbjct: 117 RTPAALSATGQPVVSHTYSATLGFSAYELDLFGRVRSLSAQALEQYLATVEARRSSQISL 176 Query: 169 IAQVAITYLTLSELNERLFLAGQTLASRAESYRIFKRRVEVGSTSRLNL----TQVAVLL 224 +A+VA YLTL+ + L LA TL+S++++YR+ +R E+G+ SRL L T V Sbjct: 177 VAEVATAYLTLAADQDLLKLAQDTLSSQSDTYRLNQRSYELGTASRLTLRQSQTSVDAAR 236 Query: 225 TQAQSLVAQLEQEREMQIHRLALLVGTQLSEATLQQRLSEVEAPR-----RLRPGIPSDL 279 + AQ+ Q+R + L LLVG + L + L + A + PG+ SDL Sbjct: 237 VDVERYTAQVAQDR----NALVLLVGADVPAELLPRSLPDPSAASGSVLATIPPGLASDL 292 Query: 280 LNNRPDIIAAEHQLRAANANIGAARAAFFPRIALTGSAGTASAELGGLFDSGSRAWTFSP 339 L RPDI+ AEH L+AANANIGAARAAFFP I+LT SAGT+SA L GLF GS W+F P Sbjct: 293 LQRRPDILQAEHDLKAANANIGAARAAFFPSISLTASAGTSSASLAGLFKGGSGVWSFGP 352 Query: 340 GISLPLFDGGLRNSNLKLTEARRHIAVLNYEKAIQSAFRDVSDALSARVWLDYQVDIAAV 399 ISLP+FDGG +NL + A R IA+ YEKAIQ+AFR+VSDAL+ R L Q+D Sbjct: 353 QISLPIFDGGANRANLDIANASRDIALAQYEKAIQTAFREVSDALAQRGTLGRQLDAQQS 412 Query: 400 TLEVQAERARLSNLRYDNGSASFLEVLDAQRDLLVAQQQLVQLQRALAAGNVSLYAALGG 459 ++ ++ +L+ R+ G S+L VLD+QR L AQQ L+ + + + Y LGG Sbjct: 413 LVDATSDSYQLATARFKRGVDSYLNVLDSQRSLYTAQQNLINTRLSRLTNLATFYKTLGG 472 >RSc0009 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 514 Score = 335 bits (858), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 206/484 (42%), Positives = 285/484 (58%), Gaps = 24/484 (4%) Query: 14 LGGCVSLAPDYIRPALPVPTHYPNAAAALRESAEP------------IGWRSYFQDAHLQ 61 L GC SLAP Y R A PV YP A A SA+ +GWR +F D LQ Sbjct: 23 LSGC-SLAPRYERLAAPVAGDYPQAPAGYGVSADTAKPGETAPRATDLGWREFFPDPRLQ 81 Query: 62 SLIELALQNSQDLRLALARVDEARAAYGIEAAAQFPTVGAQAGLDRARVPGDLNLTGKPL 121 LI L+L+N++DLR+A+ ++ ARA Y + A P + A A R+ P ++ TG+ + Sbjct: 82 RLIGLSLENNRDLRVAILNIEAARAQYRQQIADLLPPINATATYTRSLTPQSISQTGQDI 141 Query: 122 VSSQYQVGLGMAGWELDFWGRVRSLKDAALESYLASDAARRAVRIDLIAQVAITYLTLSE 181 + QYQ+G+G++ ++++ + V + +A SYLA++ +RA +I LI+QVA YL Sbjct: 142 NTKQYQLGVGISNYQVNLFS-VGDVTSSARASYLATEEGQRATQISLISQVAKAYLNERA 200 Query: 182 LNERLFLAGQTLASRAESYRIFKRRVEVGSTSRLNLTQVAVLLTQAQSLVAQLEQEREMQ 241 E+L LA QTL R + Y++ K+R +VG++S L+L Q L+ A+ VAQL ++ Sbjct: 201 YAEQLELAQQTLKGREDYYKLAKQRFDVGASSALDLRQNETLVESARVSVAQLTRQYAQA 260 Query: 242 IHRLALLVGTQL-SEATLQQRLSEVEAPRRLRPGIPSDLLNNRPDIIAAEHQLRAANANI 300 + L LLVG+ L ++ +S + + PG+PS+LL RPDI AE +L AANANI Sbjct: 261 TNALVLLVGSPLPADLPPPTTVSSEKIVADIPPGLPSELLEQRPDIRQAEQKLVAANANI 320 Query: 301 GAARAAFFPRIALTGSAGTASAELGGLFDSGSRAWTFSPGISLPLFDGGLRNSNLKLTEA 360 G ARAAFFP + LT + GTAS L LF SG+ W+F P ++LP+F+ G NL LT+A Sbjct: 321 GVARAAFFPSLGLTSNVGTASTALHDLFKSGTGLWSFVPNLTLPIFNWGTNVFNLDLTKA 380 Query: 361 RRHIAVLNYEKAIQSAFRDVSDALSARVWLDYQVDIAAVTLEVQAERARLSNLRYDNGSA 420 + IAV NYEK IQ+AF++VSDAL AR LD QV + AER LS+ RY NG + Sbjct: 381 NQKIAVANYEKTIQTAFQEVSDALVARGTLDEQVAAQKRFRDATAERLTLSDQRYRNGVS 440 Query: 421 SFLEVLDAQRDLLVAQQQLVQLQRALAAGNVSLYAALGGAADDAAAGXSSASHAVFTFAR 480 SFL+VLDAQRDL A Q LVQ + A V LY ALGG + H+ A+ Sbjct: 441 SFLDVLDAQRDLFSADQTLVQTRLARLTNAVDLYTALGGGLQE---------HSTTVAAQ 491 Query: 481 HGRP 484 RP Sbjct: 492 QARP 495 >STM0350 [MU] COG1538 Outer membrane protein Sty Salmonella typhimurium LT2 Length = 503 Score = 306 bits (783), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 188/454 (41%), Positives = 260/454 (57%), Gaps = 10/454 (2%) Query: 14 LGGCVSLAPDYIRPALPVPTHYPNAAAALR--ESAEPIGWRSYFQDAHLQSLIELALQNS 71 L GC ++AP + RPA P YP A + + A IGWR +F D LQ LI +AL+N+ Sbjct: 41 LAGC-TMAPKHERPASPTAMVYPYATSTVSGAPDAADIGWRDFFHDPLLQELIAIALRNN 99 Query: 72 QDLRLALARVDEARAAYGIEAAAQFPTVGAQAGLDRARVPGDLNLTGKPLVSSQYQVGLG 131 +DLR A V+ ARA Y I+ A PT+G +D +R P DL++ + ++ +Y+ Sbjct: 100 RDLRKAGLNVEAARALYRIQRAEMLPTLGIATAMDASRTPADLSVMDESEINRRYEAAGA 159 Query: 132 MAGWELDFWGRVRSLKDAALESYLASDAARRAVRIDLIAQVAITYLTLSELNERLFLAGQ 191 WELD WGRVRSL D AL +Y+A D A R+ L+++VA +LTL E L L Sbjct: 160 TTAWELDLWGRVRSLSDQALAAYMALDETYIAARMSLVSEVASAWLTLRADRELLRLTED 219 Query: 192 TLASRAESYRIFKRRVEVGSTSRLNLTQVAVLLTQAQSLVAQLEQEREMQIHRLALLVGT 251 TLA++ SY + + G+ ++L+L + L A+ A ++ + L LL+G Sbjct: 220 TLAAQKSSYTLTTQLARTGNATQLDLRMAEIALRSAEINRAAYTRQLARDRNALELLLGQ 279 Query: 252 QLSEATLQQRLSEVEA------PRRLRPGIPSDLLNNRPDIIAAEHQLRAANANIGAARA 305 L+ L +RL+E P L G+PSDLL RPDI AAE++LR ANA IGAARA Sbjct: 280 PLTPE-LSRRLNEAVTLTEGAIPTTLPGGLPSDLLVRRPDIRAAEYRLRGANARIGAARA 338 Query: 306 AFFPRIALTGSAGTASAELGGLFDSGSRAWTFSPGISLPLFDGGLRNSNLKLTEARRHIA 365 AFFP I+LTGSAGTASA L GLF+ GS +W F P I+LPLF GG ++L ++ I Sbjct: 339 AFFPTISLTGSAGTASASLSGLFEPGSGSWRFLPQITLPLFHGGALRADLDRAHVQKQIE 398 Query: 366 VLNYEKAIQSAFRDVSDALSARVWLDYQVDIAAVTLEVQAERARLSNLRYDNGSASFLEV 425 + YE IQ AFRDV+D L+ + L+ QV +E L+ LR+ G +L + Sbjct: 399 IARYENVIQQAFRDVADGLAGQRTLNDQVQSEQRAVEASQIAYELAGLRFQEGVDDYLTL 458 Query: 426 LDAQRDLLVAQQQLVQLQRALAAGNVSLYAALGG 459 LD R L AQQ+LV+ + ++LY ALGG Sbjct: 459 LDTHRMLYGAQQRLVRTRLMQQLNIINLYKALGG 492