BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0221.p (352 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM3586_2 [V] COG0842 ABC-type multidrug transport system, perme... 486 e-137 yhiH_2 [V] COG0842 ABC-type multidrug transport system, permease... 470 e-132 ZyhiH_2 [V] COG0842 ABC-type multidrug transport system, permeas... 469 e-132 ECs4359_2 [V] COG0842 ABC-type multidrug transport system, perme... 469 e-132 AGl430_2 [V] COG0842 ABC-type multidrug transport system, permea... 442 e-124 >STM3586_2 [V] COG0842 ABC-type multidrug transport system, permease component Sty Salmonella typhimurium LT2 Length = 362 Score = 486 bits (1251), Expect = e-137, Method: Compositional matrix adjust. Identities = 239/352 (67%), Positives = 295/352 (83%), Gaps = 1/352 (0%) Query: 1 VRATLALLGTAILLFIIGYGISLDVENLSYAVLDRDQTALSQSYALNLSGSRYFIEKAAL 60 VR+TLALLGT IL+ I+GYGIS+DVENL +AVLDRDQT SQ+++LNL+GSRYFIE+ L Sbjct: 10 VRSTLALLGTVILMLIMGYGISMDVENLRFAVLDRDQTVSSQAWSLNLAGSRYFIEQPPL 69 Query: 61 SDYNDIDRRMRNGELALAIEIPPGFARDLERGAPAQIGAWIDGSMPMRAETVRGYVLAMH 120 + Y+++DRRMR+GELA+AIEIPP F RD+ RG PAQIG W+DG+MP RAETV+GYV AMH Sbjct: 70 ASYDELDRRMRSGELAVAIEIPPNFGRDIARGTPAQIGVWVDGAMPSRAETVKGYVQAMH 129 Query: 121 QLWLVDMATHRLG-MRPVATSSVETRYRYNPDVKSLPAMVPAVIPMLLMMIPAMLAALSV 179 Q WL + A+ + ++ V ++ETRYRYNPDVKSLPA+VPAVIP+LLMMIP+ML+ALSV Sbjct: 130 QSWLQEAASRQPNPVKQVGLLNIETRYRYNPDVKSLPAIVPAVIPLLLMMIPSMLSALSV 189 Query: 180 VREKELGSIINLYVTPVTRAEFLLGKQVPYVLLGMLNFLLLTLLAVSVFGVPIKGDFASL 239 VREKELGS+INLYVTP TR+EFLLGKQ+PY+ LGMLNFLLL L+V VFGVP+KG F +L Sbjct: 190 VREKELGSMINLYVTPTTRSEFLLGKQLPYIALGMLNFLLLCALSVFVFGVPLKGSFLTL 249 Query: 240 ALTAFVFIICSTGFGLLASTFTRSQIAAIFVTMIGTIIPCVQFAGLLNPVSSLEGVGAWI 299 L A +++I +TG GLL STF +SQIAAIF T I T+IP QF+G+++PV+SLEG G WI Sbjct: 250 TLAALLYVIIATGLGLLISTFMKSQIAAIFGTSIITLIPATQFSGMIDPVASLEGPGRWI 309 Query: 300 GRLYPASHFLTISRGIFNKALDLSGLMPSFWSLLAAVPVILGASVLLLRKQE 351 G +YP SHFLTI+RG F+KALDLS L P F LL AVPV++G S+LLL+KQE Sbjct: 310 GEIYPTSHFLTIARGTFSKALDLSDLWPLFMPLLIAVPVVMGLSILLLKKQE 361 >yhiH_2 [V] COG0842 ABC-type multidrug transport system, permease component Eco Escherichia coli K12 Length = 362 Score = 470 bits (1210), Expect = e-132, Method: Compositional matrix adjust. Identities = 233/354 (65%), Positives = 289/354 (81%), Gaps = 5/354 (1%) Query: 1 VRATLALLGTAILLFIIGYGISLDVENLSYAVLDRDQTALSQSYALNLSGSRYFIEKAAL 60 VR+TLAL+GT IL+ I+GYGIS+DVENL +AVLDRDQT SQ++ LNLSGSRYFIE+ L Sbjct: 10 VRSTLALMGTVILMLIMGYGISMDVENLRFAVLDRDQTVSSQAWTLNLSGSRYFIEQPPL 69 Query: 61 SDYNDIDRRMRNGELALAIEIPPGFARDLERGAPAQIGAWIDGSMPMRAETVRGYVLAMH 120 + Y+++DRRMR G++ +AIEIPP F RD+ RG P ++G WIDG+MP RAETV+GYV AMH Sbjct: 70 TSYDELDRRMRAGDITVAIEIPPNFGRDIARGTPVELGVWIDGAMPSRAETVKGYVQAMH 129 Query: 121 QLWLVDMATHRLGMRPVATS---SVETRYRYNPDVKSLPAMVPAVIPMLLMMIPAMLAAL 177 Q WL D+A+ + P + S ++ETRYRYNPDVKSLPA+VPAVIP+LLMMIP+ML+AL Sbjct: 130 QSWLQDVASRQ--STPASQSGLMNIETRYRYNPDVKSLPAIVPAVIPLLLMMIPSMLSAL 187 Query: 178 SVVREKELGSIINLYVTPVTRAEFLLGKQVPYVLLGMLNFLLLTLLAVSVFGVPIKGDFA 237 SVVREKELGSIINLYVTP TR+EFLLGKQ+PY+ LGMLNF LL L+V VFGVP KG F Sbjct: 188 SVVREKELGSIINLYVTPTTRSEFLLGKQLPYIALGMLNFFLLCGLSVFVFGVPHKGSFL 247 Query: 238 SLALTAFVFIICSTGFGLLASTFTRSQIAAIFVTMIGTIIPCVQFAGLLNPVSSLEGVGA 297 +L L A ++II +TG GLL STF +SQIAAIF T I T+IP QF+G+++PV+SLEG G Sbjct: 248 TLTLAALLYIIIATGMGLLISTFMKSQIAAIFGTAIITLIPATQFSGMIDPVASLEGPGR 307 Query: 298 WIGRLYPASHFLTISRGIFNKALDLSGLMPSFWSLLAAVPVILGASVLLLRKQE 351 WIG +YP SHFLTI+RG F+KALDL+ L F LL A+P+++G S+LLL+KQE Sbjct: 308 WIGEVYPTSHFLTIARGTFSKALDLTDLWQLFIPLLIAIPLVMGLSILLLKKQE 361 >ZyhiH_2 [V] COG0842 ABC-type multidrug transport system, permease component EcZ Escherichia coli O157:H7 EDL933 Length = 362 Score = 469 bits (1208), Expect = e-132, Method: Compositional matrix adjust. Identities = 233/354 (65%), Positives = 289/354 (81%), Gaps = 5/354 (1%) Query: 1 VRATLALLGTAILLFIIGYGISLDVENLSYAVLDRDQTALSQSYALNLSGSRYFIEKAAL 60 VR+TLAL+GT IL+ I+GYGIS+DVENL +AVLDRDQT SQ++ LNLSGSRYFIE+ L Sbjct: 10 VRSTLALMGTVILMLIMGYGISMDVENLRFAVLDRDQTVSSQAWTLNLSGSRYFIEQPLL 69 Query: 61 SDYNDIDRRMRNGELALAIEIPPGFARDLERGAPAQIGAWIDGSMPMRAETVRGYVLAMH 120 + Y+++DRRMR G++ +AIEIPP F RD+ RG P ++G WIDG+MP RAETV+GYV AMH Sbjct: 70 TSYDELDRRMRAGDITVAIEIPPNFGRDIARGTPVELGVWIDGAMPSRAETVKGYVQAMH 129 Query: 121 QLWLVDMATHRLGMRPVATS---SVETRYRYNPDVKSLPAMVPAVIPMLLMMIPAMLAAL 177 Q WL D+A+ + P + S ++ETRYRYNPDVKSLPA+VPAVIP+LLMMIP+ML+AL Sbjct: 130 QSWLQDVASRQ--STPSSQSGLMNIETRYRYNPDVKSLPAIVPAVIPLLLMMIPSMLSAL 187 Query: 178 SVVREKELGSIINLYVTPVTRAEFLLGKQVPYVLLGMLNFLLLTLLAVSVFGVPIKGDFA 237 SVVREKELGSIINLYVTP TR+EFLLGKQ+PY+ LGMLNF LL L+V VFGVP KG F Sbjct: 188 SVVREKELGSIINLYVTPTTRSEFLLGKQLPYIALGMLNFFLLCGLSVFVFGVPHKGSFL 247 Query: 238 SLALTAFVFIICSTGFGLLASTFTRSQIAAIFVTMIGTIIPCVQFAGLLNPVSSLEGVGA 297 +L L A ++II +TG GLL STF +SQIAAIF T I T+IP QF+G+++PV+SLEG G Sbjct: 248 TLTLAALLYIIIATGMGLLISTFMKSQIAAIFGTAIITLIPATQFSGMIDPVASLEGPGR 307 Query: 298 WIGRLYPASHFLTISRGIFNKALDLSGLMPSFWSLLAAVPVILGASVLLLRKQE 351 WIG +YP SHFLTI+RG F+KALDL+ L F LL A+P+++G S+LLL+KQE Sbjct: 308 WIGEVYPTSHFLTIARGTFSKALDLTDLWQLFIPLLIAIPLVMGLSILLLKKQE 361 >ECs4359_2 [V] COG0842 ABC-type multidrug transport system, permease component Ecs Escherichia coli O157:H7 Length = 378 Score = 469 bits (1206), Expect = e-132, Method: Compositional matrix adjust. Identities = 233/354 (65%), Positives = 289/354 (81%), Gaps = 5/354 (1%) Query: 1 VRATLALLGTAILLFIIGYGISLDVENLSYAVLDRDQTALSQSYALNLSGSRYFIEKAAL 60 VR+TLAL+GT IL+ I+GYGIS+DVENL +AVLDRDQT SQ++ LNLSGSRYFIE+ L Sbjct: 26 VRSTLALMGTVILMLIMGYGISMDVENLRFAVLDRDQTVSSQAWTLNLSGSRYFIEQPLL 85 Query: 61 SDYNDIDRRMRNGELALAIEIPPGFARDLERGAPAQIGAWIDGSMPMRAETVRGYVLAMH 120 + Y+++DRRMR G++ +AIEIPP F RD+ RG P ++G WIDG+MP RAETV+GYV AMH Sbjct: 86 TSYDELDRRMRAGDITVAIEIPPNFGRDIARGTPVELGVWIDGAMPSRAETVKGYVQAMH 145 Query: 121 QLWLVDMATHRLGMRPVATS---SVETRYRYNPDVKSLPAMVPAVIPMLLMMIPAMLAAL 177 Q WL D+A+ + P + S ++ETRYRYNPDVKSLPA+VPAVIP+LLMMIP+ML+AL Sbjct: 146 QSWLQDVASRQ--STPSSQSGLMNIETRYRYNPDVKSLPAIVPAVIPLLLMMIPSMLSAL 203 Query: 178 SVVREKELGSIINLYVTPVTRAEFLLGKQVPYVLLGMLNFLLLTLLAVSVFGVPIKGDFA 237 SVVREKELGSIINLYVTP TR+EFLLGKQ+PY+ LGMLNF LL L+V VFGVP KG F Sbjct: 204 SVVREKELGSIINLYVTPTTRSEFLLGKQLPYIALGMLNFFLLCGLSVFVFGVPHKGSFL 263 Query: 238 SLALTAFVFIICSTGFGLLASTFTRSQIAAIFVTMIGTIIPCVQFAGLLNPVSSLEGVGA 297 +L L A ++II +TG GLL STF +SQIAAIF T I T+IP QF+G+++PV+SLEG G Sbjct: 264 TLTLAALLYIIIATGMGLLISTFMKSQIAAIFGTAIITLIPATQFSGMIDPVASLEGPGR 323 Query: 298 WIGRLYPASHFLTISRGIFNKALDLSGLMPSFWSLLAAVPVILGASVLLLRKQE 351 WIG +YP SHFLTI+RG F+KALDL+ L F LL A+P+++G S+LLL+KQE Sbjct: 324 WIGEVYPTSHFLTIARGTFSKALDLTDLWQLFIPLLIAIPLVMGLSILLLKKQE 377 >AGl430_2 [V] COG0842 ABC-type multidrug transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 400 Score = 442 bits (1138), Expect = e-124, Method: Compositional matrix adjust. Identities = 222/351 (63%), Positives = 280/351 (79%), Gaps = 1/351 (0%) Query: 1 VRATLALLGTAILLFIIGYGISLDVENLSYAVLDRDQTALSQSYALNLSGSRYFIEKAAL 60 +R TLA+LG+ IL+F+IGYGI+LDVE+LS+AVLDRD + +S+ Y L+++GSRYFIEK + Sbjct: 48 IRGTLAVLGSVILMFVIGYGINLDVEDLSFAVLDRDDSTISRDYVLDIAGSRYFIEKEPI 107 Query: 61 SDYNDIDRRMRNGELALAIEIPPGFARDLERGAPAQIGAWIDGSMPMRAETVRGYVLAMH 120 DY D+DRRMR+GEL+LAIEIPPGF RD+ RG ++GAWIDG+MP RAETVRGYV MH Sbjct: 108 RDYADMDRRMRDGELSLAIEIPPGFGRDVLRGKTVEVGAWIDGAMPQRAETVRGYVQGMH 167 Query: 121 QLWLVDMATHRLGMRPVATS-SVETRYRYNPDVKSLPAMVPAVIPMLLMMIPAMLAALSV 179 Q WL A+ G +S S+ETRYRYNPDVKSL AMVPAVIP+LLM+IPAMLAALSV Sbjct: 168 QTWLARKASEIYGNAATQSSFSIETRYRYNPDVKSLVAMVPAVIPLLLMLIPAMLAALSV 227 Query: 180 VREKELGSIINLYVTPVTRAEFLLGKQVPYVLLGMLNFLLLTLLAVSVFGVPIKGDFASL 239 VREKELGSI+NLYVTP TR EFL+GKQ+PYV LGMLNFLLLT A+ +F VP G + + Sbjct: 228 VREKELGSIVNLYVTPTTRLEFLIGKQLPYVALGMLNFLLLTAFAIFIFQVPFTGSYLAY 287 Query: 240 ALTAFVFIICSTGFGLLASTFTRSQIAAIFVTMIGTIIPCVQFAGLLNPVSSLEGVGAWI 299 A A +F+I +T GL+ S+F +SQIAAIF T + T+IP Q++G+++PVSSL+G GA+I Sbjct: 288 ATGALLFVIIATSIGLVMSSFMKSQIAAIFGTALLTLIPATQYSGMIDPVSSLQGAGAFI 347 Query: 300 GRLYPASHFLTISRGIFNKALDLSGLMPSFWSLLAAVPVILGASVLLLRKQ 350 G +YPA++F+TISRG F+K LD +GL SF LL A+P++L A LLRKQ Sbjct: 348 GNIYPATYFMTISRGTFSKGLDFAGLSGSFLPLLIAIPLLLIAGAALLRKQ 398