BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0220.p         (147 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEI0656 [V] COG0842 ABC-type multidrug transport system, permea...   150   1e-36
PA5230 [V] COG0842 ABC-type multidrug transport system, permease...   144   9e-35
AGl429 [V] COG0842 ABC-type multidrug transport system, permease...   139   2e-33
STM3585 [V] COG0842 ABC-type multidrug transport system, permeas...   135   3e-32
ZyhhJ [V] COG0842 ABC-type multidrug transport system, permease ...   130   8e-31

>BMEI0656 [V] COG0842 ABC-type multidrug transport system, permease component
           Bme Brucella melitensis
          Length = 370

 Score =  150 bits (378), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 77/134 (57%), Positives = 92/134 (68%)

Query: 10  VANITRLGVKELWSLARDPAMLVLIAYTFTVSIYVAATAMPDSLHNAAIAIVDEDGSPLS 69
           +ANI RLG+KEL  L RDP +L+LI Y FT++IY AA AMP++L+NAAIAIVDED SP+S
Sbjct: 3   IANIFRLGIKELRGLMRDPMLLILIVYAFTLAIYTAAKAMPETLNNAAIAIVDEDQSPVS 62

Query: 70  ARIAASFYPPYFKTPDMISLSRMDVGMDNGDYTFVLDIPPGFQRDVLAGRSPGGFAGRTA 129
            RI  +FYPPYF  P +IS   MD  MD G  TF L+IPP FQRD+LAGR+P       A
Sbjct: 63  GRITTAFYPPYFVPPKLISSYEMDNRMDEGLDTFALNIPPDFQRDLLAGRAPTIQLNVDA 122

Query: 130 ERGRHAHEPGIYRQ 143
            R   A   G Y Q
Sbjct: 123 TRMSQAFTGGGYVQ 136


>PA5230 [V] COG0842 ABC-type multidrug transport system, permease component
           Pae Pseudomonas aeruginosa
          Length = 374

 Score =  144 bits (362), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 69/114 (60%), Positives = 86/114 (75%)

Query: 8   RAVANITRLGVKELWSLARDPAMLVLIAYTFTVSIYVAATAMPDSLHNAAIAIVDEDGSP 67
           R++ANI  LG+KE  SL RD AML LI + FT+ +Y +AT +P++LH+A IA+VDED S 
Sbjct: 2   RSLANIFNLGIKEFRSLGRDYAMLALIVWAFTLGVYSSATGIPETLHHAPIAVVDEDRSQ 61

Query: 68  LSARIAASFYPPYFKTPDMISLSRMDVGMDNGDYTFVLDIPPGFQRDVLAGRSP 121
           LS+RI  +F PPYF+ P+MI  + MD GMD G YTF LDIPP FQRDVLAGR P
Sbjct: 62  LSSRIVNAFQPPYFRPPEMIGHAEMDRGMDVGLYTFTLDIPPDFQRDVLAGRKP 115


>AGl429 [V] COG0842 ABC-type multidrug transport system, permease component
           Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 372

 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/133 (52%), Positives = 90/133 (67%)

Query: 11  ANITRLGVKELWSLARDPAMLVLIAYTFTVSIYVAATAMPDSLHNAAIAIVDEDGSPLSA 70
           +NI +LG+KEL  LARD  +L+LI Y FT+ IY  ++A+P++L+NAAIAIVDED SPLS 
Sbjct: 6   SNIFQLGIKELRGLARDGMLLLLIVYAFTLQIYTGSSALPETLNNAAIAIVDEDQSPLSG 65

Query: 71  RIAASFYPPYFKTPDMISLSRMDVGMDNGDYTFVLDIPPGFQRDVLAGRSPGGFAGRTAE 130
           RI+ +FYPPYF  P  IS++ MD  MD G  TF L+IPP FQR ++AG+ P       A 
Sbjct: 66  RISTAFYPPYFAPPKQISIAEMDKRMDAGLDTFALNIPPDFQRRLMAGQQPAIQLNIDAT 125

Query: 131 RGRHAHEPGIYRQ 143
           R   A   G Y Q
Sbjct: 126 RMSQAFSGGGYVQ 138


>STM3585 [V] COG0842 ABC-type multidrug transport system, permease component
           Sty Salmonella typhimurium LT2
          Length = 374

 Score =  135 bits (340), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/136 (52%), Positives = 85/136 (62%)

Query: 8   RAVANITRLGVKELWSLARDPAMLVLIAYTFTVSIYVAATAMPDSLHNAAIAIVDEDGSP 67
           R + NI  LGVKEL SL  D AML LI + FT+S+Y +AT +P SLH A IAI D D S 
Sbjct: 2   RGLRNIYNLGVKELRSLLGDKAMLALIVFAFTISVYSSATVLPGSLHLAPIAIADMDQSQ 61

Query: 68  LSARIAASFYPPYFKTPDMISLSRMDVGMDNGDYTFVLDIPPGFQRDVLAGRSPGGFAGR 127
           LS RI  SFY P+F  P+MI+ + MD G+D G YTF ++IPP FQRDVLAGR P      
Sbjct: 62  LSNRIVNSFYRPWFLPPEMITATEMDAGLDAGRYTFAVNIPPNFQRDVLAGRQPDIQVNV 121

Query: 128 TAERGRHAHEPGIYRQ 143
            A R   A     Y Q
Sbjct: 122 DATRMSQAFTGNSYIQ 137


>ZyhhJ [V] COG0842 ABC-type multidrug transport system, permease component
           EcZ Escherichia coli O157:H7 EDL933
          Length = 375

 Score =  130 bits (328), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 71/136 (52%), Positives = 84/136 (61%)

Query: 8   RAVANITRLGVKELWSLARDPAMLVLIAYTFTVSIYVAATAMPDSLHNAAIAIVDEDGSP 67
           R + NI  LG+KEL SL  D AML LI ++FTVS+Y +AT  P SL+ A IAI D D S 
Sbjct: 3   RHLRNIFNLGIKELRSLLGDKAMLTLIVFSFTVSVYSSATVTPGSLNLAPIAIADMDQSQ 62

Query: 68  LSARIAASFYPPYFKTPDMISLSRMDVGMDNGDYTFVLDIPPGFQRDVLAGRSPGGFAGR 127
           LS RI  SFY P+F  P+MI+   MD G+D G YTF ++IPP FQRDVLAGR P      
Sbjct: 63  LSNRIVNSFYRPWFLPPEMITADEMDAGLDAGRYTFAINIPPNFQRDVLAGRQPDIQVNV 122

Query: 128 TAERGRHAHEPGIYRQ 143
            A R   A     Y Q
Sbjct: 123 DATRMSQAFTGNGYIQ 138