BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0205.p (254 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1235 [K] COG2207 AraC-type DNA-binding domain-containing prote... 221 2e-57 PA3927 [K] COG2207 AraC-type DNA-binding domain-containing prote... 192 7e-49 PA0791 [K] COG2207 AraC-type DNA-binding domain-containing prote... 189 4e-48 mll2686 [K] COG2207 AraC-type DNA-binding domain-containing prot... 186 5e-47 BMEI1291 [K] COG2207 AraC-type DNA-binding domain-containing pro... 176 5e-44 >PA1235 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 260 Score = 221 bits (562), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 115/244 (47%), Positives = 167/244 (68%) Query: 10 INANAPAAALAIDYPHGHVIELHRHAYAQLLYAIEGVLVVETAEGRWVVPPTRGVWLQPE 69 + + P A A DY HG +ELHRH+ AQL++A+ GV+ V TAEG WVVPP RGVWL Sbjct: 5 LPSTRPVFAYAQDYLHGERVELHRHSRAQLIHALSGVVTVGTAEGTWVVPPGRGVWLPAG 64 Query: 70 VDHQVRMRGDVKMRTVFVNMQELPNMPQENCVLDIPPLLRELIVAAVGIGPALVADGRDW 129 ++H +R G V+MRT+F+ Q ++P++ V+D+PPLLR+LIVAA+ I P GRD Sbjct: 65 IEHALRFAGQVRMRTLFIAPQARHDLPRDCRVVDVPPLLRQLIVAAMRIAPDYPPGGRDE 124 Query: 130 HLLRLLVHELRSVPVLPLYLPLPADRGLRVICEALMAQPDDDATVDMHAQQLGIATRTFH 189 ++ L++ ELR +P+L L++P P D L +C +L A+P D ++ A++LG++ RT Sbjct: 125 RVMELILDELRVLPILALHVPQPVDPRLAALCRSLRAEPAADWSLGDAARRLGVSPRTLT 184 Query: 190 RLFLRETGMRFSHWRQQARLLLALENLARGDKIIDVALDHGYTSQSAFAAMFKKHFGIAP 249 R F RETG+ F W ++ RLL +L+ LA G I++VALD GY SQSAF+AMF++ G++P Sbjct: 185 RAFQRETGLSFVQWLRRMRLLASLDALAAGHSILEVALDLGYDSQSAFSAMFRRTLGVSP 244 Query: 250 SRFF 253 S +F Sbjct: 245 SLYF 248 >PA3927 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 262 Score = 192 bits (487), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 99/237 (41%), Positives = 144/237 (60%) Query: 17 AALAIDYPHGHVIELHRHAYAQLLYAIEGVLVVETAEGRWVVPPTRGVWLQPEVDHQVRM 76 AA+++D+P GH + H H AQ LYA G++ + T G WV+PPTR VW+ P V+H++ M Sbjct: 12 AAISLDFPDGHHLGRHFHPQAQFLYAARGLMRLATHHGAWVIPPTRAVWIPPRVEHEIFM 71 Query: 77 RGDVKMRTVFVNMQELPNMPQENCVLDIPPLLRELIVAAVGIGPALVADGRDWHLLRLLV 136 G+V MRT+F+ E P + CVL + PLLRE+I+ A+ + D L L++ Sbjct: 72 SGEVHMRTLFIEQPETPTPLSDCCVLAVTPLLREMILRAIHLESQPRLDDFCQRLQGLIL 131 Query: 137 HELRSVPVLPLYLPLPADRGLRVICEALMAQPDDDATVDMHAQQLGIATRTFHRLFLRET 196 E+ ++ +PLYLP+P DR L+ IC+AL+ QP+ T+D ++G ++RT RLF +E Sbjct: 132 SEIANLERMPLYLPMPRDRRLQAICQALLKQPELGLTLDDWGLRVGASSRTLARLFAQEL 191 Query: 197 GMRFSHWRQQARLLLALENLARGDKIIDVALDHGYTSQSAFAAMFKKHFGIAPSRFF 253 M F WRQQ RL AL L GD + VA D GY S AF++MF++ G P + Sbjct: 192 QMSFHEWRQQLRLTEALPRLLAGDSVQVVARDLGYGSTRAFSSMFRRLLGETPRDYL 248 >PA0791 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 262 Score = 189 bits (481), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 99/235 (42%), Positives = 143/235 (60%), Gaps = 1/235 (0%) Query: 18 ALAIDYPHGHVIELHRHAYAQLLYAIEGVLVVETAEGRWVVPPTRGVWLQPEVDHQVRMR 77 A+ DYP G+++ HRH AQLLY GV+ V T + WVVPP R VW+ P V+H+VRM Sbjct: 18 AMGTDYPDGYLLPRHRHRRAQLLYGASGVMQVRTGDAGWVVPPQRAVWIPPGVEHEVRML 77 Query: 78 GDVKMRTVFVNMQELPNMPQENCVLDIPPLLRELIVAAVGIGPALVADGRDWHLLRLLVH 137 G V R++++ MP VL + PLLR+L++AAV + +GRD L LL+H Sbjct: 78 G-VSTRSLYIEPGSAMAMPAHCQVLAVSPLLRQLLLAAVDMPLEYDTEGRDGALATLLLH 136 Query: 138 ELRSVPVLPLYLPLPADRGLRVICEALMAQPDDDATVDMHAQQLGIATRTFHRLFLRETG 197 EL + LPL++PLP + +CEA + +PD A+ + A L + R+F+R F R TG Sbjct: 137 ELAAAETLPLHVPLPPEPRWLALCEAFLVEPDIRASAERWAGLLHTSLRSFNRTFRRYTG 196 Query: 198 MRFSHWRQQARLLLALENLARGDKIIDVALDHGYTSQSAFAAMFKKHFGIAPSRF 252 + F W+Q+A ++ AL LA G+ + +ALD GY S +AF+ MF++ G PS F Sbjct: 197 LSFGAWKQRACVVQALARLAGGETVTAIALDCGYQSPAAFSTMFRRVLGQPPSAF 251 >mll2686 [K] COG2207 AraC-type DNA-binding domain-containing proteins Mlo Mesorhizobium loti Length = 292 Score = 186 bits (471), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 100/251 (39%), Positives = 146/251 (58%) Query: 4 SNYHHMINANAPAAALAIDYPHGHVIELHRHAYAQLLYAIEGVLVVETAEGRWVVPPTRG 63 S + + PA AL +YP G+ + HRH +QLL+A+ GV++V T GRW+VPP Sbjct: 21 SRWQWLEEVAGPAVALPTEYPDGYHVPQHRHRRSQLLHALVGVVLVTTRHGRWMVPPDHA 80 Query: 64 VWLQPEVDHQVRMRGDVKMRTVFVNMQELPNMPQENCVLDIPPLLRELIVAAVGIGPALV 123 +W+ ++H V M GDV MR+V+V +P +P+ V+ + L+ LIV + + Sbjct: 81 MWIPAGIEHSVEMLGDVSMRSVYVMPGAIPGLPEGLRVVGVTELMHSLIVESEKLPQGGE 140 Query: 124 ADGRDWHLLRLLVHELRSVPVLPLYLPLPADRGLRVICEALMAQPDDDATVDMHAQQLGI 183 +GR +++LL+HE+ ++P PL LP P+D L +C +A P AT+D A G+ Sbjct: 141 LEGRGGLIMKLLLHEIPTLPERPLGLPFPSDARLAALCRRFVAAPSPHATIDEWADAAGM 200 Query: 184 ATRTFHRLFLRETGMRFSHWRQQARLLLALENLARGDKIIDVALDHGYTSQSAFAAMFKK 243 + R+F R F R+TG+ S WRQQA L AL LA G+ I VALD GY S AF MFK+ Sbjct: 201 SRRSFTRAFQRQTGLSLSTWRQQACLFAALPRLADGEPITRVALDLGYDSVPAFITMFKR 260 Query: 244 HFGIAPSRFFR 254 G +P + R Sbjct: 261 MLGSSPRGYMR 271 >BMEI1291 [K] COG2207 AraC-type DNA-binding domain-containing proteins Bme Brucella melitensis Length = 300 Score = 176 bits (446), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 89/244 (36%), Positives = 144/244 (59%), Gaps = 1/244 (0%) Query: 11 NANAPAAALAIDYPHGHVIELHRHAYAQLLYAIEGVLVVETAEGRWVVPPTRGVWLQPEV 70 + PA AL YP G+ + H H+ AQLL A +GV++V T GRW++P +W+ V Sbjct: 41 SMTGPAIALPTRYPDGYFVPRHSHSRAQLLCASQGVVLVTTDAGRWMIPSDHAMWIPAGV 100 Query: 71 DHQVRMRGDVKMRTVFVNMQELPNMPQENCVLDIPPLLRELIVAAVGIGPALVADGRDWH 130 +H V + GDV MR++++++ + +P V+ + L+R LI+ A + RD Sbjct: 101 EHSVAILGDVFMRSIYISVDAISGVPNYLHVVGLTDLMRCLIIDATSHDSIPAPESRDGL 160 Query: 131 LLRLLVHELRSVPVLPLYLPLPADRGLRVICEALMAQPDDDATVDMHAQQLGIATRTFHR 190 ++ L++ +L ++P PL LP P+D L+ +C + +P AT+D A ++ ++ R+F R Sbjct: 161 VIELILRDLHTLPEYPLGLPFPSDPRLQKLCRDFVKKPSSRATIDEWADRMAMSRRSFTR 220 Query: 191 LFLRETGMRFSHWRQQARLLLALENLARGDKIIDVALDHGYTSQSAFAAMFKKHFGIAPS 250 F RETG+ S WRQQA L A+ L+ G+ + VALD GY S SAF MF++ G+ P Sbjct: 221 HFQRETGVSLSVWRQQACLFAAVPRLSEGEPVTSVALDLGYDSVSAFTTMFRRMLGVPP- 279 Query: 251 RFFR 254 +F++ Sbjct: 280 KFYQ 283