BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0202.p         (149 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0398 [S] COG2314 Predicted membrane protein Pae Pseudomonas ae...   216   2e-56

>PA0398 [S] COG2314 Predicted membrane protein Pae Pseudomonas aeruginosa
          Length = 134

 Score =  216 bits (549), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 102/125 (81%), Positives = 114/125 (91%)

Query: 18  HDTHSKTIGYLLWIFGFTGAHRFYYGKPLTGTIWFFTLGLLGIGWIIDLFLIPAMDREAD 77
           HDTHSK IGYLLWIFGFTG+HRFYYGKP+TGTIWFFT GL  IGWIIDLFLIP+MDREAD
Sbjct: 5   HDTHSKAIGYLLWIFGFTGSHRFYYGKPITGTIWFFTFGLFFIGWIIDLFLIPSMDREAD 64

Query: 78  QRFSGGAINYSVAWLLLTFLGFFGVHRMYMGKWVSGIIYLCTGGLFLIGVLYDFWTLNTQ 137
           +RF GG ++Y+VAW+LLTFLG  GVHRMYMGKW++GIIYL TGGLF +GVLYDFWTLN Q
Sbjct: 65  RRFQGGNLDYNVAWILLTFLGVLGVHRMYMGKWITGIIYLFTGGLFFLGVLYDFWTLNGQ 124

Query: 138 ISERN 142
           +SERN
Sbjct: 125 VSERN 129