BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0199.p         (148 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4513_2 [P] COG0369 Sulfite reductase, alpha subunit (flavoprot...   120   1e-27
CC3063 [P] COG0369 Sulfite reductase, alpha subunit (flavoprotei...   117   9e-27

>PA4513_2 [P] COG0369 Sulfite reductase, alpha subunit (flavoprotein) Pae
           Pseudomonas aeruginosa
          Length = 455

 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/144 (52%), Positives = 88/144 (61%), Gaps = 5/144 (3%)

Query: 1   MDGLQAVRDGTRQTSLNELLSRRLLPDDLQALTALGALTPQTLVGQLRPLPHREYSIASL 60
           +DG   V     + SL + L+ RLLPD  + L  L    PQ L+  L PL  R+YSIASL
Sbjct: 210 LDGQARVAVEGVEQSLEQALAGRLLPDSFEHLVGL---HPQALLDALIPLSVRQYSIASL 266

Query: 61  PQDGQLELLVRQTVLTDGSLGLGSGWLTAHLGEGGEIDLRVRENRSFHPPASDVPLILIG 120
             DG L+L+VRQ    DGSLG+ SGWLT +L  G  + LR+R N  FH P  DVPLILIG
Sbjct: 267 QSDGDLQLIVRQEQHADGSLGICSGWLTEYLPLGAALTLRLRRNAGFHLPEDDVPLILIG 326

Query: 121 NGTGLAGLRPGXTLEAMAAHGRYR 144
           NGTGLAGLR    L A  A GR R
Sbjct: 327 NGTGLAGLRS--LLRASIAAGRKR 348


>CC3063 [P] COG0369 Sulfite reductase, alpha subunit (flavoprotein) Ccr
           Caulobacter vibrioides
          Length = 504

 Score =  117 bits (293), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 68/117 (58%), Positives = 77/117 (65%), Gaps = 2/117 (1%)

Query: 25  LPDDLQALTALGALTPQTLVGQLRPLPHREYSIASLPQDGQLELLVRQTVLTDGSLGLGS 84
           LP D  AL AL  L  + L  +L  LPHREYSIASLP DG +EL+VR     DG+ GLGS
Sbjct: 280 LPQDAAALDALRGLPLEALAERLTALPHREYSIASLPDDGGVELIVRLMTRADGAPGLGS 339

Query: 85  GWLTAHLGEGGEIDLRVRENRSFHPPASDVPLILIGNGTGLAGLRPGXTLEAMAAHG 141
           GWL  H   G  I+ RVR NRSFH P +  PLILIG+GTGLAGLR    L+A AA G
Sbjct: 340 GWLCRHAPIGAAIEARVRVNRSFHAPETKRPLILIGSGTGLAGLR--AHLKARAAAG 394