BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0183.p         (123 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0179 [T] COG0784 FOG Pae Pseudomonas aeruginosa                     129   2e-30
VCA1096 [T] COG0784 FOG Vch Vibrio cholerae                           125   3e-29
CC0432 [T] COG0784 FOG Ccr Caulobacter vibrioides                     108   4e-24
all1068_2 [T] COG0784 FOG Nos Nostoc sp. PCC 7120                     102   2e-22
RSp1409 [T] COG0784 FOG Rso Ralstonia solanacearum                    102   2e-22

>PA0179 [T] COG0784 FOG Pae Pseudomonas aeruginosa
          Length = 121

 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 81/118 (68%)

Query: 4   KTILIVDDSFSLRQTISIALKAAGYDVVEAIDGRDALNKLDGRKYNLIISDVNMPNLDGL 63
           K ILIVDDS S+RQ +S  LK+AGY+V EA DG++ L K   + Y+L+ +D NMPN+DGL
Sbjct: 3   KPILIVDDSASIRQMLSFTLKSAGYEVDEAADGKEGLGKAQSKSYSLVFTDQNMPNMDGL 62

Query: 64  SFVREAKQKPNYKFTPVLMLTTESGDTRKQEGKAIGVRAWVHKPFLPPVLLDAVAKLV 121
           S +R  +    Y+  P+LMLTTES D  KQ+G++ G   W+ KPF PP LL+   K++
Sbjct: 63  SLIRSLRNLAGYRSVPILMLTTESSDAMKQQGRSAGATGWLVKPFDPPKLLEVTRKVL 120


>VCA1096 [T] COG0784 FOG Vch Vibrio cholerae
          Length = 125

 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/116 (49%), Positives = 80/116 (68%)

Query: 6   ILIVDDSFSLRQTISIALKAAGYDVVEAIDGRDALNKLDGRKYNLIISDVNMPNLDGLSF 65
           +L VDDS S+RQ +S  L+ AGY+V  A DGR+AL K    ++++IISDVNMP + G  F
Sbjct: 10  VLAVDDSISIRQMVSHTLQDAGYEVETAADGREALAKAQKARFDVIISDVNMPVMTGFEF 69

Query: 66  VREAKQKPNYKFTPVLMLTTESGDTRKQEGKAIGVRAWVHKPFLPPVLLDAVAKLV 121
           V+  + +  YKFTP+LMLTTE+   +KQEGKA+G   W+ KPF P  LL  + +++
Sbjct: 70  VKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRVL 125


>CC0432 [T] COG0784 FOG Ccr Caulobacter vibrioides
          Length = 121

 Score =  108 bits (269), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 75/117 (64%)

Query: 4   KTILIVDDSFSLRQTISIALKAAGYDVVEAIDGRDALNKLDGRKYNLIISDVNMPNLDGL 63
           +T+L VDDS ++R  + +AL  AG++VVEA+DG   L  L   + ++II+D+NMP LDG 
Sbjct: 3   RTVLTVDDSRTMRDMLRMALAGAGFNVVEAVDGEHGLEVLSAHRPDVIITDINMPKLDGF 62

Query: 64  SFVREAKQKPNYKFTPVLMLTTESGDTRKQEGKAIGVRAWVHKPFLPPVLLDAVAKL 120
            F+   +   +Y+  P+L+LTTES   +KQ  +  G   W+ KPF P  L+DA+ ++
Sbjct: 63  GFIEAVRVDDDYRAIPILVLTTESDPAKKQRAREAGATGWIVKPFNPEKLVDAIRRV 119


>all1068_2 [T] COG0784 FOG Nos Nostoc sp. PCC 7120
          Length = 167

 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 77/119 (64%), Gaps = 1/119 (0%)

Query: 4   KTILIVDDSFSLRQTISIALKAAGYDVVEAIDGRDALNKLDGR-KYNLIISDVNMPNLDG 62
           K IL+VDD+ SLRQT+S+ L+ +GY V++A +G +AL +L    +  L++SD+ MP ++G
Sbjct: 36  KVILVVDDAISLRQTLSLTLQKSGYQVIQAQNGAEALEQLQRHPEIQLVVSDLEMPRMNG 95

Query: 63  LSFVREAKQKPNYKFTPVLMLTTESGDTRKQEGKAIGVRAWVHKPFLPPVLLDAVAKLV 121
             F+   +  P Y   PV++LT+ S +  +Q  K +G +A++ KP+L   L++ +  L+
Sbjct: 96  FEFLSHIQHNPQYTKIPVIILTSRSAEKHRQLAKELGAKAYLSKPYLEHELINHIESLI 154


>RSp1409 [T] COG0784 FOG Rso Ralstonia solanacearum
          Length = 137

 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/125 (43%), Positives = 79/125 (63%), Gaps = 5/125 (4%)

Query: 1   MSPKTILIVDDSFSLRQTISIALKAAGYDVVEAIDGRDALN----KLDGRKYNLIISDVN 56
           MS K IL+VDDS S+R+ I+  L+A G+ V EA DG  AL     + DG  ++L+I+D  
Sbjct: 1   MSEKHILVVDDSTSIRRMIATCLRACGFAVTEATDGAAALEAVQRQADG-SHHLVITDQV 59

Query: 57  MPNLDGLSFVREAKQKPNYKFTPVLMLTTESGDTRKQEGKAIGVRAWVHKPFLPPVLLDA 116
           MP +DGL+ +R  +  P Y  TP+LMLTTE+  T + + +A G   ++ KPF P  L D+
Sbjct: 60  MPAMDGLTLIRALRTLPAYADTPILMLTTEADSTIRDQARAAGATGFLPKPFDPDGLTDS 119

Query: 117 VAKLV 121
           V +L+
Sbjct: 120 VMQLL 124