BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0178.p         (247 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPO2147 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ...   276   3e-74
dadA [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Eco...   270   2e-72
ZdadA [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Ec...   270   2e-72
ECs1684 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ...   270   2e-72
STM1803 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ...   269   4e-72

>YPO2147 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Ype
           Yersinia pestis
          Length = 434

 Score =  276 bits (706), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 124/174 (71%), Positives = 149/174 (85%)

Query: 62  ELVRGDAYVVALGSYSANFLRRIVDIPVYPLKGYSITVPVVDSRAAPVSTILDETYKIAV 121
           ++++ DAYVVA G+YS   L  +V IPVYPLKGYS+T+P+ D  +AP ST+LDETYKIA+
Sbjct: 242 DIIKADAYVVAFGAYSTALLAGLVSIPVYPLKGYSLTIPITDPASAPFSTVLDETYKIAI 301

Query: 122 TRFDNRIRVGGMAEVVGFNKELNPKRRATLELVVNDLFPGAGNTAQASFWTGLRPMTPDG 181
           TRFD+RIRVGGMAE+VGFN +L P RR TLE+VV DL+P  G+ +QA FW+GLRPMTPDG
Sbjct: 302 TRFDDRIRVGGMAEIVGFNTQLAPARRETLEMVVRDLYPHGGDISQAVFWSGLRPMTPDG 361

Query: 182 TPIVGATPLNNLFLNTGHGTLGWTMSCGSGQLLADLISGKRPAIAADDLSMARY 235
           TPIVG TPL NL+LNTGHGTLGWTM+CGSGQLLAD+I G+RPAI ADDLS+ARY
Sbjct: 362 TPIVGRTPLKNLYLNTGHGTLGWTMACGSGQLLADIIQGRRPAIVADDLSVARY 415


>dadA [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Eco
           Escherichia coli K12
          Length = 432

 Score =  270 bits (691), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 124/174 (71%), Positives = 146/174 (83%)

Query: 62  ELVRGDAYVVALGSYSANFLRRIVDIPVYPLKGYSITVPVVDSRAAPVSTILDETYKIAV 121
           E+++ DAYV+A GSYS   L+ IVDIPVYPLKGYS+T+P+     APVSTILDETYKIA+
Sbjct: 242 EVIKADAYVMAFGSYSTAMLKGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAI 301

Query: 122 TRFDNRIRVGGMAEVVGFNKELNPKRRATLELVVNDLFPGAGNTAQASFWTGLRPMTPDG 181
           TRFDNRIRVGGMAE+VGFN EL   RR TLE+VV DL+P  G+  QA+FWTGLRPMTPDG
Sbjct: 302 TRFDNRIRVGGMAEIVGFNTELLQPRRETLEMVVRDLYPRGGHVEQATFWTGLRPMTPDG 361

Query: 182 TPIVGATPLNNLFLNTGHGTLGWTMSCGSGQLLADLISGKRPAIAADDLSMARY 235
           TP+VG T   NL+LNTGHGTLGWTM+CGSGQLL+DL+SG+ PAI  +DLS+ARY
Sbjct: 362 TPVVGRTRFKNLWLNTGHGTLGWTMACGSGQLLSDLLSGRTPAIPYEDLSVARY 415


>ZdadA [E] COG0665 Glycine/D-amino acid oxidases (deaminating) EcZ
           Escherichia coli O157:H7 EDL933
          Length = 432

 Score =  270 bits (691), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 124/174 (71%), Positives = 146/174 (83%)

Query: 62  ELVRGDAYVVALGSYSANFLRRIVDIPVYPLKGYSITVPVVDSRAAPVSTILDETYKIAV 121
           E+++ DAYV+A GSYS   L+ IVDIPVYPLKGYS+T+P+     APVSTILDETYKIA+
Sbjct: 242 EVIKADAYVMAFGSYSTAMLKGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAI 301

Query: 122 TRFDNRIRVGGMAEVVGFNKELNPKRRATLELVVNDLFPGAGNTAQASFWTGLRPMTPDG 181
           TRFDNRIRVGGMAE+VGFN EL   RR TLE+VV DL+P  G+  QA+FWTGLRPMTPDG
Sbjct: 302 TRFDNRIRVGGMAEIVGFNTELLQPRRETLEMVVRDLYPRGGHVEQATFWTGLRPMTPDG 361

Query: 182 TPIVGATPLNNLFLNTGHGTLGWTMSCGSGQLLADLISGKRPAIAADDLSMARY 235
           TP+VG T   NL+LNTGHGTLGWTM+CGSGQLL+DL+SG+ PAI  +DLS+ARY
Sbjct: 362 TPVVGRTRFKNLWLNTGHGTLGWTMACGSGQLLSDLLSGRTPAIPYEDLSVARY 415


>ECs1684 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Ecs
           Escherichia coli O157:H7
          Length = 432

 Score =  270 bits (691), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 124/174 (71%), Positives = 146/174 (83%)

Query: 62  ELVRGDAYVVALGSYSANFLRRIVDIPVYPLKGYSITVPVVDSRAAPVSTILDETYKIAV 121
           E+++ DAYV+A GSYS   L+ IVDIPVYPLKGYS+T+P+     APVSTILDETYKIA+
Sbjct: 242 EVIKADAYVMAFGSYSTAMLKGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAI 301

Query: 122 TRFDNRIRVGGMAEVVGFNKELNPKRRATLELVVNDLFPGAGNTAQASFWTGLRPMTPDG 181
           TRFDNRIRVGGMAE+VGFN EL   RR TLE+VV DL+P  G+  QA+FWTGLRPMTPDG
Sbjct: 302 TRFDNRIRVGGMAEIVGFNTELLQPRRETLEMVVRDLYPRGGHVEQATFWTGLRPMTPDG 361

Query: 182 TPIVGATPLNNLFLNTGHGTLGWTMSCGSGQLLADLISGKRPAIAADDLSMARY 235
           TP+VG T   NL+LNTGHGTLGWTM+CGSGQLL+DL+SG+ PAI  +DLS+ARY
Sbjct: 362 TPVVGRTRFKNLWLNTGHGTLGWTMACGSGQLLSDLLSGRTPAIPYEDLSVARY 415


>STM1803 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Sty
           Salmonella typhimurium LT2
          Length = 432

 Score =  269 bits (688), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 124/174 (71%), Positives = 147/174 (84%)

Query: 62  ELVRGDAYVVALGSYSANFLRRIVDIPVYPLKGYSITVPVVDSRAAPVSTILDETYKIAV 121
           E+++ DAYV+A GSYS   L+ IVDIPVYPLKGYS+T+P+V+   APVSTILDETYKIA+
Sbjct: 242 EIIKADAYVMAFGSYSTAMLKGIVDIPVYPLKGYSLTIPIVEPDGAPVSTILDETYKIAI 301

Query: 122 TRFDNRIRVGGMAEVVGFNKELNPKRRATLELVVNDLFPGAGNTAQASFWTGLRPMTPDG 181
           TRFD RIRVGGMAE+VGFN +L   RR TLE+VV DLFP  G+  QA+FWTGLRPMTPDG
Sbjct: 302 TRFDKRIRVGGMAEIVGFNTDLLQPRRETLEMVVRDLFPRGGHIEQATFWTGLRPMTPDG 361

Query: 182 TPIVGATPLNNLFLNTGHGTLGWTMSCGSGQLLADLISGKRPAIAADDLSMARY 235
           TP+VG T   NL+LNTGHGTLGWTM+CGSGQLL+D++SG+ PAI  DDLS+ARY
Sbjct: 362 TPVVGRTRYKNLWLNTGHGTLGWTMACGSGQLLSDILSGRTPAIPYDDLSVARY 415