BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0171.p         (185 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPO1667 [NT] COG0835 Chemotaxis signal transduction protein Ype ...    99   6e-21
CAC0119 [NT] COG0835 Chemotaxis signal transduction protein Cac ...    99   6e-21
VCA1094 [NT] COG0835 Chemotaxis signal transduction protein Vch ...    98   1e-20
cheW [NT] COG0835 Chemotaxis signal transduction protein Eco Esc...    95   7e-20
ECs2597 [NT] COG0835 Chemotaxis signal transduction protein Ecs ...    95   7e-20

>YPO1667 [NT] COG0835 Chemotaxis signal transduction protein Ype Yersinia
           pestis
          Length = 165

 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 91/146 (62%), Gaps = 4/146 (2%)

Query: 23  SRQFLTFVLGEEMFAMPIEDIREIIEFSSLTEVPLMPSFLRGVINLRGAVVPVIDLSVRF 82
            ++FL F LG+E + + I  ++EI  +  +T +   P+F++GV NLRG +VP+IDL V+F
Sbjct: 16  GQEFLIFTLGDEEYGIDILKVQEIRGYDQVTRIANTPAFIKGVTNLRGVIVPIIDLRVKF 75

Query: 83  GRAQTAVAKRTCIVIMELMQEQQGLLLGVMVDAVRAVLTVEDEKIEPPLSFGARLRADFI 142
            +      + T ++++   Q     ++G++VD V  VL++ +E+I P   F   L  +++
Sbjct: 76  AQQGVTYNENTVVIVLNFGQR----VVGIVVDGVSDVLSLTNEQIRPAPEFAVTLATEYL 131

Query: 143 EGMINIKDRFVVVLDVKAVLSVDELS 168
            G+ ++ +R ++++D++ +LS +E+S
Sbjct: 132 TGLGSLGERMLILVDIEKLLSSEEMS 157


>CAC0119 [NT] COG0835 Chemotaxis signal transduction protein Cac Clostridium
           acetobutylicum
          Length = 168

 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 94/154 (61%), Gaps = 7/154 (4%)

Query: 18  QESVQSRQFLTFVLGEEMFAMPIEDIREIIEFSSLTEVPLMPSFLRGVINLRGAVVPVID 77
           +E  Q+ +FL F+   E + + I+ + EII  S ++E+P +P ++ GVINLRG V+PVID
Sbjct: 11  EEDTQNGKFLIFITDGEQYGIEIKHVIEIIGISPISEIPELPQYIMGVINLRGKVIPVID 70

Query: 78  LSVRFGRAQTAVAKRTCIVIMELMQEQQGLLLGVMVDAVRAVLTV-EDEKIEPPLSFGAR 136
           + +RF +       RTCIVI+++    Q +L+G++VD V  VL + E+E ++PP    ++
Sbjct: 71  IRLRFNKIFKEYNDRTCIVIIDV----QDMLIGIIVDKVLEVLKISENEIMDPPEI--SK 124

Query: 137 LRADFIEGMINIKDRFVVVLDVKAVLSVDELSTL 170
            +  +I+ +    D    +LD   ++S +E++ L
Sbjct: 125 DKNGYIKAIGKTHDGMNFILDCGKLISSEEINKL 158


>VCA1094 [NT] COG0835 Chemotaxis signal transduction protein Vch Vibrio
           cholerae
          Length = 175

 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 85/143 (59%), Gaps = 2/143 (1%)

Query: 25  QFLTFVLGEEMFAMPIEDIREIIEFSSLTEVPLMPSFLRGVINLRGAVVPVIDLSVRFGR 84
            FL+F+LG E++ + +  + EI  +   T +P  P F++GVINLRG +VP+IDL  RFG 
Sbjct: 29  DFLSFMLGTELYGVTLSHVEEIRVWEKPTPIPRAPHFVKGVINLRGMIVPIIDLRQRFGL 88

Query: 85  AQTAVAKRTCIVIMELMQEQQGLLLGVMVDAVRAVLTVEDEKIEPPLSFGARLRADFIEG 144
            Q      T ++I+   +++Q  L+G++VD+V  V+   D  + P  + G  +   F+ G
Sbjct: 89  TQYEYLPTTVVLILSAREQEQKRLMGLVVDSVSDVIGQGDMPLHP--AIGESMVVPFLSG 146

Query: 145 MINIKDRFVVVLDVKAVLSVDEL 167
           ++N+ D  + +LD  A+L +D +
Sbjct: 147 ILNVGDEVMSLLDSDALLDMDRI 169


>cheW [NT] COG0835 Chemotaxis signal transduction protein Eco Escherichia
           coli K12
          Length = 167

 Score = 95.1 bits (235), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 92/153 (60%), Gaps = 4/153 (2%)

Query: 23  SRQFLTFVLGEEMFAMPIEDIREIIEFSSLTEVPLMPSFLRGVINLRGAVVPVIDLSVRF 82
            ++FL F LG+E + + I  ++EI  +  +T +   P+F++GV NLRG +VP++DL ++F
Sbjct: 16  GQEFLVFTLGDEEYGIDILKVQEIRGYDQVTRIANTPAFIKGVTNLRGVIVPIVDLRIKF 75

Query: 83  GRAQTAVAKRTCIVIMELMQEQQGLLLGVMVDAVRAVLTVEDEKIEPPLSFGARLRADFI 142
            +        T ++++ L Q     ++G++VD V  VL++  E+I P   F   L  +++
Sbjct: 76  SQVDVDYNDNTVVIVLNLGQR----VVGIVVDGVSDVLSLTAEQIRPAPEFAVTLSTEYL 131

Query: 143 EGMINIKDRFVVVLDVKAVLSVDELSTLIGVAA 175
            G+  + DR +++++++ +L+ +E++ L   A+
Sbjct: 132 TGLGALGDRMLILVNIEKLLNSEEMALLDSAAS 164


>ECs2597 [NT] COG0835 Chemotaxis signal transduction protein Ecs Escherichia
           coli O157:H7
          Length = 167

 Score = 95.1 bits (235), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 92/153 (60%), Gaps = 4/153 (2%)

Query: 23  SRQFLTFVLGEEMFAMPIEDIREIIEFSSLTEVPLMPSFLRGVINLRGAVVPVIDLSVRF 82
            ++FL F LG+E + + I  ++EI  +  +T +   P+F++GV NLRG +VP++DL ++F
Sbjct: 16  GQEFLVFTLGDEEYGIDILKVQEIRGYDQVTRIANTPAFIKGVTNLRGVIVPIVDLRIKF 75

Query: 83  GRAQTAVAKRTCIVIMELMQEQQGLLLGVMVDAVRAVLTVEDEKIEPPLSFGARLRADFI 142
            +        T ++++ L Q     ++G++VD V  VL++  E+I P   F   L  +++
Sbjct: 76  SQVDVDYNDNTVVIVLNLGQR----VVGIVVDGVSDVLSLTAEQIRPAPEFAVTLSTEYL 131

Query: 143 EGMINIKDRFVVVLDVKAVLSVDELSTLIGVAA 175
            G+  + DR +++++++ +L+ +E++ L   A+
Sbjct: 132 TGLGALGDRMLILVNIEKLLNSEEMALLDSAAS 164