BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0170.p (278 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM1918 [NT] COG1352 Methylase of chemotaxis methyl-accepting pr... 174 1e-43 ZcheR [NT] COG1352 Methylase of chemotaxis methyl-accepting prot... 166 6e-41 ECs2594 [NT] COG1352 Methylase of chemotaxis methyl-accepting pr... 166 6e-41 cheR [NT] COG1352 Methylase of chemotaxis methyl-accepting prote... 165 1e-40 PA0175 [NT] COG1352 Methylase of chemotaxis methyl-accepting pro... 159 6e-39 >STM1918 [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins Sty Salmonella typhimurium LT2 Length = 288 Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 105/266 (39%), Positives = 140/266 (52%), Gaps = 7/266 (2%) Query: 12 LDVSDQEMLLFQQLFREHIGLYLPFSKKALLCSRLSRRLGELSLSSLKEYHSMISRPQEE 71 L +SD QL + G+ L K+ ++ +RL RRL L L Y SM+ Q Sbjct: 20 LALSDAHFRRICQLIYQRAGIVLADHKRDMVYNRLVRRLRALGLDDFGRYLSMLEANQNS 79 Query: 72 AERQRAIDLITTNETYFFREQKHFDALRDQILPQIDRRH-PLKVWSAASATGEEAYSIAM 130 AE Q I+ +TTN T FFRE HF L + RRH +VWSAA++TGEE YSIA+ Sbjct: 80 AEWQAFINALTTNLTAFFREAHHFPILAEHA----RRRHGEYRVWSAAASTGEEPYSIAI 135 Query: 131 LLDDQRSQHP--WSVLASDISLRVLSFGRRALYPMVRGELIPPPYLSRYCLRGTGEYEGH 188 L D P W V ASDI VL R +Y + + + P L RY +RGTG +EG Sbjct: 136 TLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 195 Query: 189 FLIDQKIRKRVTFEQRNLLSLPAEMDGQFDVVFLRNVIIYFDFPTKVDVLRSVVSKLRPG 248 + Q++ V F NLL + G FD +F RNV+IYFD T+ D+LR V L+P Sbjct: 196 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPD 255 Query: 249 GWLVVGHSESLHGMPLELQMHAPSIY 274 G L GHSE+ + E + ++Y Sbjct: 256 GLLFAGHSENFSNLVREFSLRGQTVY 281 >ZcheR [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins EcZ Escherichia coli O157:H7 EDL933 Length = 286 Score = 166 bits (420), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 100/265 (37%), Positives = 137/265 (51%), Gaps = 5/265 (1%) Query: 12 LDVSDQEMLLFQQLFREHIGLYLPFSKKALLCSRLSRRLGELSLSSLKEYHSMISRPQEE 71 L +SD QL + G+ L K+ ++ +RL RRL L L+ Y +++ Q Sbjct: 20 LALSDAHFRRISQLIYQRAGIVLADHKRDMVYNRLVRRLRSLGLTDFGHYLNLLESNQHS 79 Query: 72 AERQRAIDLITTNETYFFREQKHFDALRDQILPQIDRRHPLKVWSAASATGEEAYSIAML 131 E Q I+ +TTN T FFRE HF L D R +VWSAA++TGEE YSIAM Sbjct: 80 GEWQAFINSLTTNLTAFFREAHHFPLLADHAR---RRSGEYRVWSAAASTGEEPYSIAMT 136 Query: 132 LDDQRSQHP--WSVLASDISLRVLSFGRRALYPMVRGELIPPPYLSRYCLRGTGEYEGHF 189 L D P W V ASDI VL R +Y + + P L RY +RGTG +EG Sbjct: 137 LADTLGTAPGRWKVFASDIDTEVLEKARSGIYRHEELKNLTPQQLQRYFMRGTGPHEGLV 196 Query: 190 LIDQKIRKRVTFEQRNLLSLPAEMDGQFDVVFLRNVIIYFDFPTKVDVLRSVVSKLRPGG 249 + Q++ V F NLL+ + G FD +F RNV+IYFD T+ ++LR V L+P G Sbjct: 197 RVRQELANYVDFASLNLLAKQYTVPGPFDAIFCRNVMIYFDQTTQQEILRRFVPLLKPDG 256 Query: 250 WLVVGHSESLHGMPLELQMHAPSIY 274 L GHSE+ + + ++Y Sbjct: 257 LLFAGHSENFSHLERRFTLRGQTVY 281 >ECs2594 [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins Ecs Escherichia coli O157:H7 Length = 286 Score = 166 bits (420), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 100/265 (37%), Positives = 137/265 (51%), Gaps = 5/265 (1%) Query: 12 LDVSDQEMLLFQQLFREHIGLYLPFSKKALLCSRLSRRLGELSLSSLKEYHSMISRPQEE 71 L +SD QL + G+ L K+ ++ +RL RRL L L+ Y +++ Q Sbjct: 20 LALSDAHFRRISQLIYQRAGIVLADHKRDMVYNRLVRRLRSLGLTDFGHYLNLLESNQHS 79 Query: 72 AERQRAIDLITTNETYFFREQKHFDALRDQILPQIDRRHPLKVWSAASATGEEAYSIAML 131 E Q I+ +TTN T FFRE HF L D R +VWSAA++TGEE YSIAM Sbjct: 80 GEWQAFINSLTTNLTAFFREAHHFPLLADHAR---RRSGEYRVWSAAASTGEEPYSIAMT 136 Query: 132 LDDQRSQHP--WSVLASDISLRVLSFGRRALYPMVRGELIPPPYLSRYCLRGTGEYEGHF 189 L D P W V ASDI VL R +Y + + P L RY +RGTG +EG Sbjct: 137 LADTLGTAPGRWKVFASDIDTEVLEKARSGIYRHEELKNLTPQQLQRYFMRGTGPHEGLV 196 Query: 190 LIDQKIRKRVTFEQRNLLSLPAEMDGQFDVVFLRNVIIYFDFPTKVDVLRSVVSKLRPGG 249 + Q++ V F NLL+ + G FD +F RNV+IYFD T+ ++LR V L+P G Sbjct: 197 RVRQELANYVDFASLNLLAKQYTVPGPFDAIFCRNVMIYFDQTTQQEILRRFVPLLKPDG 256 Query: 250 WLVVGHSESLHGMPLELQMHAPSIY 274 L GHSE+ + + ++Y Sbjct: 257 LLFAGHSENFSHLERRFTLRGQTVY 281 >cheR [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins Eco Escherichia coli K12 Length = 286 Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 100/265 (37%), Positives = 137/265 (51%), Gaps = 5/265 (1%) Query: 12 LDVSDQEMLLFQQLFREHIGLYLPFSKKALLCSRLSRRLGELSLSSLKEYHSMISRPQEE 71 L +SD QL + G+ L K+ ++ +RL RRL L L+ Y +++ Q Sbjct: 20 LALSDAHFRRISQLIYQRAGIVLADHKRDMVYNRLVRRLRSLGLTDFGHYLNLLESNQHS 79 Query: 72 AERQRAIDLITTNETYFFREQKHFDALRDQILPQIDRRHPLKVWSAASATGEEAYSIAML 131 E Q I+ +TTN T FFRE HF L D R +VWSAA++TGEE YSIAM Sbjct: 80 GEWQAFINSLTTNLTAFFREAHHFPLLADHAR---RRSGEYRVWSAAASTGEEPYSIAMT 136 Query: 132 LDDQRSQHP--WSVLASDISLRVLSFGRRALYPMVRGELIPPPYLSRYCLRGTGEYEGHF 189 L D P W V ASDI VL R +Y + + P L RY +RGTG +EG Sbjct: 137 LADTLGTAPGRWKVFASDIDTEVLEKARSGIYRHEELKNLTPQQLQRYFMRGTGPHEGLV 196 Query: 190 LIDQKIRKRVTFEQRNLLSLPAEMDGQFDVVFLRNVIIYFDFPTKVDVLRSVVSKLRPGG 249 + Q++ V F NLL+ + G FD +F RNV+IYFD T+ ++LR V L+P G Sbjct: 197 RVRQELANYVDFAPLNLLAKQYTVPGPFDAIFCRNVMIYFDQTTQQEILRRFVPLLKPDG 256 Query: 250 WLVVGHSESLHGMPLELQMHAPSIY 274 L GHSE+ + + ++Y Sbjct: 257 LLFAGHSENFSHLERRFTLRGQTVY 281 >PA0175 [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins Pae Pseudomonas aeruginosa Length = 280 Score = 159 bits (403), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 105/244 (43%), Positives = 144/244 (59%), Gaps = 9/244 (3%) Query: 22 FQQLFREHI----GLYLPFSKKALLCSRLSRRLGELSLSSLKEYHSMISRPQEEAERQRA 77 FQQ+ RE + G+ L SK L+ SRLSRRL L L S EY + + R E E+Q Sbjct: 22 FQQV-RERLYRLTGISLAESKAQLVYSRLSRRLRLLRLGSFAEYFTHLDR--EPGEQQLF 78 Query: 78 IDLITTNETYFFREQKHFDALRDQILPQIDRRHPLKVWSAASATGEEAYSIAMLLDDQRS 137 ++ +TTN T FFRE+ HF L D Q+ R PL++WSAA++TGEE YSIA+ L + Sbjct: 79 VNALTTNLTAFFRERHHFPLLADLARRQLQRHRPLRIWSAAASTGEEPYSIAITLVEALG 138 Query: 138 QH--PWSVLASDISLRVLSFGRRALYPMVRGELIPPPYLSRYCLRGTGEYEGHFLIDQKI 195 P ++ASDI VL R+ +YP+ R E +P P R+ LRGTG G + +++ Sbjct: 139 SFDPPVKIVASDIDTGVLDCARQGVYPLERLEQMPAPLKKRFFLRGTGPNAGKARVVEEL 198 Query: 196 RKRVTFEQRNLLSLPAEMDGQFDVVFLRNVIIYFDFPTKVDVLRSVVSKLRPGGWLVVGH 255 R+ V F Q NLL + G+ D +F RNV+IYFD PT+ +L +V+ LRP G GH Sbjct: 199 RQLVEFRQINLLEADWSIAGELDAIFCRNVMIYFDKPTQTRLLERMVALLRPEGLFFAGH 258 Query: 256 SESL 259 SE+ Sbjct: 259 SENF 262