BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0153.p (208 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc02770 [I] COG4553 Poly-beta-hydroxyalkanoate depolymerase Sme... 241 1e-63 AGc24 [I] COG4553 Poly-beta-hydroxyalkanoate depolymerase Atu Ag... 240 1e-63 mll4552 [I] COG4553 Poly-beta-hydroxyalkanoate depolymerase Mlo ... 235 6e-62 RSc1008 [I] COG4553 Poly-beta-hydroxyalkanoate depolymerase Rso ... 220 2e-57 CC0250 [I] COG4553 Poly-beta-hydroxyalkanoate depolymerase Ccr C... 217 1e-56 >SMc02770 [I] COG4553 Poly-beta-hydroxyalkanoate depolymerase Sme Sinorhizobium meliloti Length = 424 Score = 241 bits (614), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 116/208 (55%), Positives = 148/208 (71%) Query: 1 MTLMAGPLDTRVNPTTVNELAKSKPIEWFEKNLVSTVPARHPGGGRKVYPGFMQLAAFMN 60 MTLM GP+DTR+NPT VNELAK +PIEWF N+V VP PG R VYPGF+QL+ FM+ Sbjct: 202 MTLMGGPIDTRINPTAVNELAKERPIEWFRDNVVMPVPWPQPGFMRMVYPGFLQLSGFMS 261 Query: 61 MNLNRHVDAFRNLYTYLIEEEHDKAEAIKVFYEEYFAMSDLPAEFYLETVRVVFQEHALP 120 MNL+RH+ A + + +L++ + D AE + FY+EY A+ DL AEFYL+TV+VVF +HALP Sbjct: 262 MNLDRHLIAHKEFFAHLVKNDGDAAEKHRDFYDEYLAVMDLTAEFYLQTVQVVFMQHALP 321 Query: 121 LGLLQFQGRPVNLKAIRRTALFTVEGEKDDICAVGQTVAAQDMCSSIRPYMRLHHVQTAV 180 G + +G+ V+ AIRR AL TVEGE DDI +GQT AAQ +C+ I MR H++Q V Sbjct: 322 KGEMIHRGKRVDPTAIRRVALLTVEGENDDISGLGQTKAAQTICTGIPDSMRQHYMQPDV 381 Query: 181 GHYGVFNGRRWENEIYPRLRDFINMHHR 208 GHYGVFNG R+ EI PR+ F H R Sbjct: 382 GHYGVFNGSRFRREIAPRIVAFQRRHSR 409 >AGc24 [I] COG4553 Poly-beta-hydroxyalkanoate depolymerase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 418 Score = 240 bits (613), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 115/207 (55%), Positives = 144/207 (69%) Query: 1 MTLMAGPLDTRVNPTTVNELAKSKPIEWFEKNLVSTVPARHPGGGRKVYPGFMQLAAFMN 60 MTLM GP+DTR+NPT VN LA +KPIEWF N+V VP P GR VYPGF+QL+ FM+ Sbjct: 210 MTLMGGPIDTRINPTAVNGLATAKPIEWFRDNVVMQVPWPQPAFGRYVYPGFLQLSGFMS 269 Query: 61 MNLNRHVDAFRNLYTYLIEEEHDKAEAIKVFYEEYFAMSDLPAEFYLETVRVVFQEHALP 120 MNL++H+ A ++ Y L++ + D AE + FY+EY A+ DL AEFYL+TV VF +HALP Sbjct: 270 MNLDKHMTAHKDFYLNLVKNDGDSAEKHREFYDEYLAVMDLTAEFYLQTVETVFIDHALP 329 Query: 121 LGLLQFQGRPVNLKAIRRTALFTVEGEKDDICAVGQTVAAQDMCSSIRPYMRLHHVQTAV 180 G + +GR V+ AI ALFTVEGE DDI VGQT AA D+C +I R H++Q V Sbjct: 330 KGNMLHRGRAVDPTAIHNVALFTVEGENDDISGVGQTKAAHDLCRNIPEDKRAHYMQPDV 389 Query: 181 GHYGVFNGRRWENEIYPRLRDFINMHH 207 GHYGVFNG R+ EI PR+ DFI H Sbjct: 390 GHYGVFNGSRFRKEIVPRMLDFIGKHQ 416 >mll4552 [I] COG4553 Poly-beta-hydroxyalkanoate depolymerase Mlo Mesorhizobium loti Length = 425 Score = 235 bits (599), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 112/208 (53%), Positives = 148/208 (71%) Query: 1 MTLMAGPLDTRVNPTTVNELAKSKPIEWFEKNLVSTVPARHPGGGRKVYPGFMQLAAFMN 60 MTLM GP+DTR NPT VN LA+ K I+WF N+V P PG GR+VYPGF+QL+ FM+ Sbjct: 202 MTLMGGPIDTRRNPTAVNLLAEEKGIDWFRDNVVMRAPWPVPGFGREVYPGFLQLSGFMS 261 Query: 61 MNLNRHVDAFRNLYTYLIEEEHDKAEAIKVFYEEYFAMSDLPAEFYLETVRVVFQEHALP 120 MNL+RH+ A ++ + +L++ + D AE + FY+EY A+ DL AEFYL+TV VF HALP Sbjct: 262 MNLDRHIIAHKDFFMHLVKNDGDNAEKHRDFYDEYMAVMDLTAEFYLQTVDTVFVRHALP 321 Query: 121 LGLLQFQGRPVNLKAIRRTALFTVEGEKDDICAVGQTVAAQDMCSSIRPYMRLHHVQTAV 180 G ++ +G ++ AIR ALFTVEGE DDI +GQT AAQD+C +I + H++Q AV Sbjct: 322 KGEMKHRGAAIDTSAIRNVALFTVEGENDDISGLGQTKAAQDLCINIPADKKAHYMQPAV 381 Query: 181 GHYGVFNGRRWENEIYPRLRDFINMHHR 208 GHYGVFNG R+ +EI PR+ DFI + R Sbjct: 382 GHYGVFNGSRFRSEIVPRIVDFITSYGR 409 >RSc1008 [I] COG4553 Poly-beta-hydroxyalkanoate depolymerase Rso Ralstonia solanacearum Length = 422 Score = 220 bits (560), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 105/203 (51%), Positives = 138/203 (67%) Query: 1 MTLMAGPLDTRVNPTTVNELAKSKPIEWFEKNLVSTVPARHPGGGRKVYPGFMQLAAFMN 60 MT+M GP+D R +PT VN LA +K WFE N++ TVPA +PG GR+VYPGF+Q A F+ Sbjct: 207 MTMMGGPIDARKSPTAVNSLATNKSHAWFENNVIYTVPANYPGHGRRVYPGFLQHAGFVA 266 Query: 61 MNLNRHVDAFRNLYTYLIEEEHDKAEAIKVFYEEYFAMSDLPAEFYLETVRVVFQEHALP 120 MN +RHV + + Y L+E + + AEA FY+EY A+ D+ AE+YL+T+R VFQE L Sbjct: 267 MNPDRHVSSHYDYYLSLVEGDKEDAEAHVRFYDEYNAVLDMAAEYYLDTIRDVFQEFHLA 326 Query: 121 LGLLQFQGRPVNLKAIRRTALFTVEGEKDDICAVGQTVAAQDMCSSIRPYMRLHHVQTAV 180 G G+PV + I+ TALFT+EGE DDI GQT AA D+CSSI + H + Sbjct: 327 NGTWVVDGKPVRPQDIKGTALFTIEGELDDISGSGQTEAAHDLCSSIPKTRKQHLTASNC 386 Query: 181 GHYGVFNGRRWENEIYPRLRDFI 203 GHYG+F+GRRW +YP+LRDFI Sbjct: 387 GHYGIFSGRRWREFVYPQLRDFI 409 >CC0250 [I] COG4553 Poly-beta-hydroxyalkanoate depolymerase Ccr Caulobacter vibrioides Length = 427 Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 100/203 (49%), Positives = 139/203 (68%) Query: 1 MTLMAGPLDTRVNPTTVNELAKSKPIEWFEKNLVSTVPARHPGGGRKVYPGFMQLAAFMN 60 MT M P+D R++PT N+LA+ KP WF+ N++ VP + G GR+VYPGF+QLA+FM+ Sbjct: 214 MTFMGSPIDARLSPTVTNQLAEEKPFTWFQSNMIYNVPPPYAGAGRRVYPGFVQLASFMS 273 Query: 61 MNLNRHVDAFRNLYTYLIEEEHDKAEAIKVFYEEYFAMSDLPAEFYLETVRVVFQEHALP 120 MN +RH +A R + +L+ + D A+ FY+EY ++ DL EFYL+T+ +VFQ++ LP Sbjct: 274 MNADRHQEAHRRYFNHLVSGDGDSADKHLEFYDEYLSVLDLTEEFYLQTIDIVFQQYLLP 333 Query: 121 LGLLQFQGRPVNLKAIRRTALFTVEGEKDDICAVGQTVAAQDMCSSIRPYMRLHHVQTAV 180 G L +G V + I L TVEGE DDI +GQT AA +C++I M+L +VQ +V Sbjct: 334 KGELVHRGTRVKPEVITDIGLMTVEGENDDISGIGQTQAAHGLCANIPEDMKLDYVQPSV 393 Query: 181 GHYGVFNGRRWENEIYPRLRDFI 203 GHYGVFNGRR+ EIYPR+R FI Sbjct: 394 GHYGVFNGRRFREEIYPRVRKFI 416