BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0145.p         (91 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0550 [TK] COG0745 Response regulators consisting of a CheY-li...   139   2e-33
AGc4479 [TK] COG0745 Response regulators consisting of a CheY-li...    86   2e-17
PA0756 [TK] COG0745 Response regulators consisting of a CheY-lik...    82   4e-16
RSc1736 [TK] COG0745 Response regulators consisting of a CheY-li...    76   2e-14
STM2785 [TK] COG0745 Response regulators consisting of a CheY-li...    74   6e-14

>RSc0550 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Rso
           Ralstonia solanacearum
          Length = 232

 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/83 (83%), Positives = 73/83 (87%)

Query: 1   MLDLSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGGI 60
           M+DLSARELGLLE+LL R GRLVSKEQLVDHLC WGEEVSNNAIEVYVHRLRKKIEV GI
Sbjct: 150 MVDLSARELGLLEILLSRAGRLVSKEQLVDHLCGWGEEVSNNAIEVYVHRLRKKIEVDGI 209

Query: 61  RIATVRGLGYCLEKLPESIASAG 83
           RIATVRGLGYCLE++    A  G
Sbjct: 210 RIATVRGLGYCLERVSVPAAVHG 232


>AGc4479 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 245

 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/76 (52%), Positives = 55/76 (72%)

Query: 2   LDLSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGGIR 61
           LD+ ARE+ LLEVL  R G++V+KE +V  L  + +++S NAIE YV RLRK++   G+ 
Sbjct: 167 LDIPAREVALLEVLFMRAGKVVAKEAIVQSLTGFDDDISANAIEQYVSRLRKRLAPHGLT 226

Query: 62  IATVRGLGYCLEKLPE 77
           + T RG+GY LEKLPE
Sbjct: 227 VKTARGIGYYLEKLPE 242


>PA0756 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Pae
           Pseudomonas aeruginosa
          Length = 223

 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 52/72 (72%)

Query: 2   LDLSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGGIR 61
           L L++RE  +LE ++ R GR++SKEQL   +    EE S +AIE+YVHRLRKK+E G +R
Sbjct: 148 LTLTSREQAVLEAMIARPGRVMSKEQLAAQVFGLDEEASADAIEIYVHRLRKKLEGGAVR 207

Query: 62  IATVRGLGYCLE 73
           I T RGLGY LE
Sbjct: 208 IVTFRGLGYLLE 219


>RSc1736 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Rso
           Ralstonia solanacearum
          Length = 230

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 56/82 (68%)

Query: 2   LDLSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGGIR 61
           L L+ RE  +LEVL+ R GR V+K  + + +    E V+ +AIE+YVHRLRKK++  G+ 
Sbjct: 148 LALTGRERAVLEVLMLRDGRAVNKAAISEKIFGINESVNADAIEIYVHRLRKKLDGSGVA 207

Query: 62  IATVRGLGYCLEKLPESIASAG 83
           I  +RGLGY LE +P++ A+ G
Sbjct: 208 IVMLRGLGYLLEAVPQAPAAVG 229


>STM2785 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Sty
           Salmonella typhimurium LT2
          Length = 224

 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 51/73 (69%)

Query: 2   LDLSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGGIR 61
           L L+ RE  LL VL+ R  R VS++QL + +    +EVS  +IE+Y+HRLRKK++   +R
Sbjct: 147 LALTPREQALLTVLMYRRTRPVSRQQLFEQVFSLNDEVSPESIELYIHRLRKKLQGSDVR 206

Query: 62  IATVRGLGYCLEK 74
           I T+RGLGY LE+
Sbjct: 207 ITTLRGLGYVLER 219