BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0141.p         (39 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3161 [TK] COG2197 Response regulator containing a CheY-like r...    71   7e-13

>RSc3161 [TK] COG2197 Response regulator containing a CheY-like receiver
           domain and an HTH DNA-binding domain Rso Ralstonia
           solanacearum
          Length = 231

 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 35/39 (89%), Positives = 35/39 (89%)

Query: 1   MQLSPFTVRTFVRRIYSKLKVTSKTEAIYEARTLGLLPD 39
           M LS FTVRTFVRRIYSKLKVTSK EAIYEARTLGLL D
Sbjct: 193 MALSHFTVRTFVRRIYSKLKVTSKAEAIYEARTLGLLSD 231