BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0140.p         (526 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3160 [T] COG4585 Signal transduction histidine kinase Rso Ral...   667   0.0  

>RSc3160 [T] COG4585 Signal transduction histidine kinase Rso Ralstonia
           solanacearum
          Length = 626

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/544 (64%), Positives = 409/544 (75%), Gaps = 37/544 (6%)

Query: 5   LAGRPIPADADTPAAPLALYASRIKTDGTVAVYLNGRLVHRAQQRGQLWNSLFTPLWILP 64
           LA  P+P  +     PLALY  R+KTDGT+AVY+NG LVHRAQQ+G LWNS  TPLW++ 
Sbjct: 88  LAVPPLPPHS----GPLALYGIRVKTDGTIAVYVNGELVHRAQQQGPLWNSTRTPLWVVL 143

Query: 65  DQAADGAPLKEILIRVEHAPETPVGLSTLWLGPAEVLQGRYYLRQWLQRELPATLSAAFM 124
           ++ AD AP++EILIR+EH   T V LS+LWLGP E L+ RY++RQWLQ+ELP  LSAAF+
Sbjct: 144 ERHADDAPVREILIRLEHTERTQVALSSLWLGPVETLRVRYHVRQWLQQELPRMLSAAFL 203

Query: 125 VVGIFALFVWFRRRHETGYLLFFNLAAVSFVGHLHYYVSLPIVVDWFAWLTANALFWLLT 184
            VGIFALFVWF+RRHETGYLLFFNLA  SF+  LH+Y  LPI  D FAWLT N+L WL+T
Sbjct: 204 AVGIFALFVWFKRRHETGYLLFFNLAVTSFLRGLHFYADLPIANDGFAWLTVNSLLWLVT 263

Query: 185 VIHLFLCQLHGRPLRRLTRAIVGITLTISILSLPVLGVLPVFPSTSLLVPLAYAIAVLMG 244
           V+H FLCQLHGR L   TRA+VG+T  I +L+LP L VLP  P  +   PL Y +A LMG
Sbjct: 264 VVHFFLCQLHGRALTWFTRALVGMTGLIGVLTLPGLAVLPNTPKVT---PLIYPMAALMG 320

Query: 245 VTVSVAGGVCSWKRSREGLLLTLGVGVSTLLGMSDWLLHNNVVSPEGWFLGAYTNAVTFA 304
             V + GG+ +W+RS EG+L+ +GV V TLLG+SDWLL NN VSPEGW+ GAYTNA+TF 
Sbjct: 321 AAVGLVGGISAWRRSNEGVLVAIGVSVCTLLGVSDWLLQNNFVSPEGWYFGAYTNAITFG 380

Query: 305 MFGTLMYRRYVNAIAEVELVNAGLAQRLEAREHELGQTHRRLREAALRQTISDERQRLMQ 364
           +FG LMYRRYVNAI+EVEL NA LAQRL+ RE EL  +H+RLR A  +Q IS ERQRLMQ
Sbjct: 381 IFGILMYRRYVNAISEVELTNANLAQRLKHREAELESSHQRLRAAERQQAISAERQRLMQ 440

Query: 365 DMHDGLGSTLISAIRSVEHGGVSDVKVSQILKDCLDDLKLTIDSMEPVEADLLLLLATLR 424
           DMHDGLG++LISAIRSVE G VSD KVSQILK CLDDLKLTIDSMEPVEADLLLLLATLR
Sbjct: 441 DMHDGLGASLISAIRSVERGAVSDAKVSQILKSCLDDLKLTIDSMEPVEADLLLLLATLR 500

Query: 425 FRLEPRLEGTDIALVWEVQELPTLDWLEPSSALHILRIVQESIANILRHTRADRIRVATA 484
           FRLEPRLEGT IAL+WEV++LPTL WL+PSSALHILRIVQESIANIL HT+A  IRV TA
Sbjct: 501 FRLEPRLEGTGIALLWEVRKLPTLTWLDPSSALHILRIVQESIANILHHTQASEIRVGTA 560

Query: 485 HA------------------------------NQRRRAQALDGAVTWLSAASGTRFTLWL 514
                                           N +RRAQA+DG V W S   GT+FTLWL
Sbjct: 561 VESTGVLVSIVDNGRGFDVEKTLAAGKGNGLRNLQRRAQAIDGTVRWTSGPEGTQFTLWL 620

Query: 515 PLAR 518
           PL R
Sbjct: 621 PLER 624