BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0134.p         (127 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yusQ Non COG                                                       113   1e-25
BS_yodA Non COG                                                        89   2e-18
BS_yrdN Non COG                                                        78   5e-15

>BS_yusQ Non COG
          Length = 127

 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 78/124 (62%)

Query: 1   MPFARVVIRRGETREYRQAILDNLYEAMVETFNVPEDDKFMVIDEYDPENFVFSKTYMNI 60
           MPF ++ +R G +  + Q +   ++++M+E  NVPEDD F VI +Y+   F +   Y+ +
Sbjct: 1   MPFVQIHLRSGRSEVWLQKLSRTIHQSMIEEINVPEDDYFQVIRQYEKSEFFYDPFYLQV 60

Query: 61  ARSDKFVIIQLTVSNTRTIEQKKALYVRIVERLNQQPGIRPEDIFINLVEVNKENWSFGH 120
            R+D+ + I  T+  +RT EQKKALY  I  R++ + G+R ED+FI L     E+WSFG+
Sbjct: 61  ERTDELIYIHFTLKQSRTTEQKKALYRSIASRIHSELGVRKEDVFIMLAGNQDEDWSFGN 120

Query: 121 GLAQ 124
           G AQ
Sbjct: 121 GRAQ 124


>BS_yodA Non COG
          Length = 129

 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 1/125 (0%)

Query: 1   MPFARVVIRRGETREYRQAILDNLYEAMVETFNVPEDDKFMVIDEYDPENFVFSKTYMNI 60
           MP  R  +  G   +  Q +LD  ++AMVE F VPE D++ ++ ++     +     +  
Sbjct: 1   MPLLRFDVIEGRDEKSLQLLLDTAHQAMVEAFGVPERDRYQIVHQHPANELIIQDAGLGF 60

Query: 61  ARSDKFVIIQLTVSNTRTIEQKKALYVRIVERLNQQPGIRPEDIFINLVEVNKENWSFGH 120
            R+   VII +T S  RT  QK+ LY  + ERL ++  I P+D+ +++ E    +WSFG 
Sbjct: 61  QRTKDMVIISMT-SKARTESQKEKLYALLAERLEKKCEISPDDLMVSITENGDADWSFGL 119

Query: 121 GLAQY 125
           G AQ+
Sbjct: 120 GEAQF 124


>BS_yrdN Non COG
          Length = 129

 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 1   MPFARVVIRRGETREYRQAILDNLYEAMVETFNVPEDDKFMVIDEYDPENFVFSKTYMNI 60
           MP  R  +  G  +   + +LD  +  +VE F+VP+ D++ ++ E+   + +   T +  
Sbjct: 1   MPLLRFDLIEGRDQSSLKKLLDVAHNVVVEAFDVPQQDRYQIVHEHPENHMIIEDTGLGF 60

Query: 61  ARSDKFVIIQLTVSNTRTIEQKKALYVRIVERLNQQPGIRPEDIFINLVEVNKENWSFGH 120
            R+   V++ +T S +R  E+K+  Y  + ERL  + GI   D+ +++VE +  +WSFG 
Sbjct: 61  NRTKNLVVLSVT-SKSRPEEKKQKFYRLLAERLESECGIASTDLIVSIVENDNADWSFGL 119

Query: 121 GLAQY 125
           G AQ+
Sbjct: 120 GEAQF 124