BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0130.p         (140 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0059 [O] COG1764 Predicted redox protein, regulator of disulfi...   169   2e-42
STM1563 [O] COG1764 Predicted redox protein, regulator of disulf...   144   5e-35
DR1538 [O] COG1764 Predicted redox protein, regulator of disulfi...   140   1e-33
osmC [O] COG1764 Predicted redox protein, regulator of disulfide...   139   2e-33
ZosmC [O] COG1764 Predicted redox protein, regulator of disulfid...   136   2e-32

>PA0059 [O] COG1764 Predicted redox protein, regulator of disulfide bond
           formation Pae Pseudomonas aeruginosa
          Length = 151

 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 83/139 (59%), Positives = 101/139 (72%)

Query: 1   MQRQASAVWNGSLRDGKGALTTESKTLDATQYSFSTRFENGVGTNPEELIAAAHAGCFSM 60
           M++ ASAVW G L+DGKG L+TES  L    Y F+TRFE   GTNPEELI AAHAGCFSM
Sbjct: 11  MKKTASAVWQGGLKDGKGTLSTESGALKDNPYGFNTRFEGAPGTNPEELIGAAHAGCFSM 70

Query: 61  DLSSRLGKAGLTVERIDTNATLTLEKVEDGFSITAIVLDVKAKLQNPDQAKFDQAVDAAK 120
            LS  LG+AGLT ERI+T A +TL+K  DGF+ITA+ L ++A++   D   F+Q  + AK
Sbjct: 71  ALSMMLGEAGLTAERIETRAEVTLDKQSDGFAITAVHLVLRARVPGADAQTFEQIANKAK 130

Query: 121 KGCPVSKVLKADISVRASL 139
            GCPVSKVL A IS+ ASL
Sbjct: 131 AGCPVSKVLNAKISLDASL 149


>STM1563 [O] COG1764 Predicted redox protein, regulator of disulfide bond
           formation Sty Salmonella typhimurium LT2
          Length = 143

 Score =  144 bits (363), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 70/139 (50%), Positives = 92/139 (66%)

Query: 1   MQRQASAVWNGSLRDGKGALTTESKTLDATQYSFSTRFENGVGTNPEELIAAAHAGCFSM 60
           + ++  A W G ++ GKG ++TES  L+   Y F+TRFE   GTNPEELI AAHA CFSM
Sbjct: 3   IHKKGQAHWEGDIKRGKGTVSTESGVLNQQPYGFNTRFEGAQGTNPEELIGAAHAACFSM 62

Query: 61  DLSSRLGKAGLTVERIDTNATLTLEKVEDGFSITAIVLDVKAKLQNPDQAKFDQAVDAAK 120
            LS  LG+AG T   IDT A ++L+KVE GF+IT I L  K  + + D + FDQ +  AK
Sbjct: 63  ALSLMLGEAGFTPTSIDTTADVSLDKVEAGFAITKIALQSKVAVADIDASTFDQIIQKAK 122

Query: 121 KGCPVSKVLKADISVRASL 139
            GCPVS+VL A+I++   L
Sbjct: 123 AGCPVSQVLNAEITLDYQL 141


>DR1538 [O] COG1764 Predicted redox protein, regulator of disulfide bond
           formation Dra Deinococcus radiodurans
          Length = 172

 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/133 (48%), Positives = 90/133 (67%)

Query: 3   RQASAVWNGSLRDGKGALTTESKTLDATQYSFSTRFENGVGTNPEELIAAAHAGCFSMDL 62
           R+ASA W G L+ G G +TTES  L   QYSF TRFENG GTNPEEL+A+AHAGCF+M L
Sbjct: 32  RKASAHWEGDLKSGNGTITTESGVLSQAQYSFKTRFENGKGTNPEELLASAHAGCFTMQL 91

Query: 63  SSRLGKAGLTVERIDTNATLTLEKVEDGFSITAIVLDVKAKLQNPDQAKFDQAVDAAKKG 122
           S+ L + G  ++ +DT+AT  + K   GF I  + L V+A+L   DQA F+  V  A + 
Sbjct: 92  SALLAEHGHEIKALDTDATCEMVKDGPGFKINHMHLRVRAQLTGSDQADFEAHVKDAAEK 151

Query: 123 CPVSKVLKADISV 135
           CP+S++++ ++ V
Sbjct: 152 CPLSRIMQGNVEV 164


>osmC [O] COG1764 Predicted redox protein, regulator of disulfide bond
           formation Eco Escherichia coli K12
          Length = 143

 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/139 (48%), Positives = 91/139 (65%)

Query: 1   MQRQASAVWNGSLRDGKGALTTESKTLDATQYSFSTRFENGVGTNPEELIAAAHAGCFSM 60
           + ++  A W G ++ GKG ++TES  L+   Y F+TRFE   GTNPEELI AAHA CFSM
Sbjct: 3   IHKKGQAHWEGDIKRGKGTVSTESGVLNQQPYGFNTRFEGEKGTNPEELIGAAHAACFSM 62

Query: 61  DLSSRLGKAGLTVERIDTNATLTLEKVEDGFSITAIVLDVKAKLQNPDQAKFDQAVDAAK 120
            LS  LG+AG T   IDT A ++L+KV+ GF+IT I L  +  +   D + FD  +  AK
Sbjct: 63  ALSLMLGEAGFTPTSIDTTADVSLDKVDAGFAITKIALKSEVAVPGIDASTFDGIIQKAK 122

Query: 121 KGCPVSKVLKADISVRASL 139
            GCPVS+VLKA+I++   L
Sbjct: 123 AGCPVSQVLKAEITLDYQL 141


>ZosmC [O] COG1764 Predicted redox protein, regulator of disulfide bond
           formation EcZ Escherichia coli O157:H7 EDL933
          Length = 143

 Score =  136 bits (342), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/139 (48%), Positives = 90/139 (64%)

Query: 1   MQRQASAVWNGSLRDGKGALTTESKTLDATQYSFSTRFENGVGTNPEELIAAAHAGCFSM 60
           + ++  A W   ++ GKG ++TES  L+   Y F+TRFE   GTNPEELI AAHA CFSM
Sbjct: 3   IHKKGQAHWESDIKRGKGTVSTESGVLNQQPYGFNTRFEGEKGTNPEELIGAAHAACFSM 62

Query: 61  DLSSRLGKAGLTVERIDTNATLTLEKVEDGFSITAIVLDVKAKLQNPDQAKFDQAVDAAK 120
            LS  LG+AG T   IDT A ++L+KV+ GF+IT I L  +  +   D + FD  +  AK
Sbjct: 63  ALSLMLGEAGFTPTSIDTTADVSLDKVDAGFAITKIALKSEVAVPGIDASTFDGIIQKAK 122

Query: 121 KGCPVSKVLKADISVRASL 139
            GCPVS+VLKA+I++   L
Sbjct: 123 AGCPVSQVLKAEITLDYQL 141