BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0121.p         (229 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0948 [E] COG1171 Threonine dehydratase Rso Ralstonia solanace...   194   1e-49
PA0851 [E] COG1171 Threonine dehydratase Pae Pseudomonas aeruginosa   192   4e-49
HI0738.1 [E] COG1171 Threonine dehydratase Hin Haemophilus influ...    92   1e-18
Cj0828c [E] COG1171 Threonine dehydratase Cje Campylobacter jejuni     89   1e-17
DR0567 [E] COG1171 Threonine dehydratase Dra Deinococcus radiodu...    87   2e-17

>RSc0948 [E] COG1171 Threonine dehydratase Rso Ralstonia solanacearum
          Length = 334

 Score =  194 bits (493), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 103/168 (61%), Positives = 121/168 (72%), Gaps = 2/168 (1%)

Query: 22  MPATPQYAWPLLSEALGAEAWVKHENHTPTGAFKIRGGLVYLQNLAQRPRQQQVRGVISA 81
           +P TPQY WPLLS+ALGA  WVKHENHT  GAFK+RGGL YL  L  R R  ++RGVI+A
Sbjct: 30  IPPTPQYCWPLLSQALGAAVWVKHENHTEVGAFKVRGGLNYLHAL--RRRDPELRGVIAA 87

Query: 82  TRGNHGQSVGFAARRYGIPATIVVPQGNSREKNAAMRALGVELVEFGQEFQESREHAAML 141
           TRGNHGQS+  AAR+ G+ ATIVVP GNS EKNAAMRALG ELVE G++FQ SRE AA  
Sbjct: 88  TRGNHGQSIALAARKQGMSATIVVPHGNSVEKNAAMRALGAELVEAGEDFQASREAAARQ 147

Query: 142 AQQEQLHMIPSFHRDLVSGVATYWIXRARGAACAQCAYAHHRRGVGAC 189
           A +  LH++P+FH DLV+GVA+YW+     AA     Y     G G C
Sbjct: 148 AAERGLHLVPAFHEDLVAGVASYWLEFFEEAAPLDVVYVPIGMGSGIC 195


>PA0851 [E] COG1171 Threonine dehydratase Pae Pseudomonas aeruginosa
          Length = 320

 Score =  192 bits (489), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 100/177 (56%), Positives = 123/177 (69%), Gaps = 2/177 (1%)

Query: 18  VYAAMPATPQYAWPLLSEALGAEAWVKHENHTPTGAFKIRGGLVYLQNLAQRPRQQQVRG 77
           V+ ++P TPQ  WPLL EALG E W+KHENH P GAFK+RGGLVY  +LA +   ++   
Sbjct: 15  VHQSLPPTPQIRWPLLCEALGCEVWMKHENHLPVGAFKLRGGLVYFHHLAHQ--GERPAA 72

Query: 78  VISATRGNHGQSVGFAARRYGIPATIVVPQGNSREKNAAMRALGVELVEFGQEFQESREH 137
           VISATRGNHGQSV F+A RYGI   IVVP GNSREKNAAMR+LG EL+E G++FQ SRE+
Sbjct: 73  VISATRGNHGQSVAFSASRYGIQPIIVVPHGNSREKNAAMRSLGAELIEHGEDFQASREY 132

Query: 138 AAMLAQQEQLHMIPSFHRDLVSGVATYWIXRARGAACAQCAYAHHRRGVGACAGLQA 194
           AA  A++E LH+IP+FH  LV+GVA+Y +      A     Y     G G C  + A
Sbjct: 133 AAERARREGLHLIPAFHPWLVAGVASYSLELFAALADLDEVYVPIGMGSGICGLIAA 189


>HI0738.1 [E] COG1171 Threonine dehydratase Hin Haemophilus influenzae
          Length = 513

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 7/162 (4%)

Query: 1   MTHLLPTHAD----IEQAAKAVYAAMPATPQYAWPLLSEALGAEAWVKHENHTPTGAFKI 56
           +T+  P+ +D    I +    VY A   TP      LSE L    W+K E+  P  +FK+
Sbjct: 5   LTNPQPSQSDYINAIVKLGSRVYEAAQVTPLQKMGKLSERLHNNIWIKREDRQPVNSFKL 64

Query: 57  RGGLVYLQNLAQRPRQQQVRGVISATRGNHGQSVGFAARRYGIPATIVVPQGNSREKNAA 116
           RG    + +L+    +Q+  GVI+A+ GNH Q V  +A++ G+ A IV+PQ     K  A
Sbjct: 65  RGAYAMISSLSA---EQKAAGVIAASAGNHAQGVALSAKQLGLKALIVMPQNTPSIKVDA 121

Query: 117 MRALGVELVEFGQEFQESREHAAMLAQQEQLHMIPSFHRDLV 158
           +R  G E++  G  F E++  A  L++++ +  IP F   LV
Sbjct: 122 VRGFGGEVLLHGANFDEAKAKAIELSKEKNMTFIPPFDHPLV 163


>Cj0828c [E] COG1171 Threonine dehydratase Cje Campylobacter jejuni
          Length = 403

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 3/148 (2%)

Query: 11  IEQAAKAVYAAMPATPQYAWPLLSEALGAEAWVKHENHTPTGAFKIRGGLVYLQNLAQRP 70
           I +A + +   +  TP      LS+   +E ++K+EN   TGA+KIRG    + NL+   
Sbjct: 7   IYKAKQQISGFVNKTPFIYSSFLSDICQSEIYLKNENLQITGAYKIRGAYNKIANLSTEQ 66

Query: 71  RQQQVRGVISATRGNHGQSVGFAARRYGIPATIVVPQGNSREKNAAMRALGVELVEFGQE 130
           +Q    GVI+A+ GNH Q V  +A+++ I A IV+P+     K +A +ALG E++  G  
Sbjct: 67  KQH---GVIAASAGNHAQGVAISAKKFSIKAVIVMPESTPLLKVSATKALGAEVILRGDN 123

Query: 131 FQESREHAAMLAQQEQLHMIPSFHRDLV 158
           F E+   A   A++  L  I  F  + V
Sbjct: 124 FDEAYAFATSYAKENNLSFIHPFEDEFV 151


>DR0567 [E] COG1171 Threonine dehydratase Dra Deinococcus radiodurans
          Length = 568

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 91/195 (46%), Gaps = 5/195 (2%)

Query: 18  VYAAMPATPQYAWPLLSEALGAEAWVKHENHTPTGAFKIRGGLVYLQNLAQRPRQQQVRG 77
           VY A   TP    P LSE  G    +K E+  P  +FK+RG       ++Q   +++ RG
Sbjct: 79  VYGAATETPLSPAPRLSERSGNRVLLKREDQQPIFSFKLRGAY---NKMSQLSAEERARG 135

Query: 78  VISATRGNHGQSVGFAARRYGIPATIVVPQGNSREKNAAMRALGVELVEFGQEFQESREH 137
           VI A+ GNH Q V FA  + GIPA IV+P      K  A RA G E++  G  F ++   
Sbjct: 136 VICASAGNHAQGVAFAGEKLGIPAVIVMPATTPDIKVQACRARGAEVILHGDSFSDAETF 195

Query: 138 AAMLAQQEQLHMIPSFHRDLV-SGVATYWIXRARGAACAQCAYAHHRRGVGACAGLQAVV 196
           A  L Q+  L  +  +   LV +G  T  +   R       A      G G  AG+ +++
Sbjct: 196 ALALQQERGLTFVHPYDDPLVLAGQGTIALELLRQVEEDDYAVFVPVGGGGLIAGVASIL 255

Query: 197 RRPQQG-RVAGDHRD 210
           +  + G RV G   D
Sbjct: 256 KALKPGVRVIGVEPD 270