BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0117.p         (150 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2594 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transp...   131   6e-31
PA3445 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transp...    88   6e-18
YPO3624 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate trans...    85   6e-17
ssuA [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transpor...    80   2e-15
ZycbO [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transpo...    77   1e-14

>PA2594 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport
           systems, periplasmic components Pae Pseudomonas
           aeruginosa
          Length = 319

 Score =  131 bits (329), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 60/82 (73%), Positives = 72/82 (87%)

Query: 65  RIGYQKSSTLLTVLKTNGTLEKLLAPLNVKISWHEFSSGLPLLEALNVGGVDLSADVADT 124
           RIG+QKSSTLLT++++ GT E+ LA   +++SWHEF SGLPLLE+LNVG VDLSADVADT
Sbjct: 32  RIGFQKSSTLLTLIRSQGTFERELARQGIRVSWHEFPSGLPLLESLNVGNVDLSADVADT 91

Query: 125 VPVFAQAAGAKLTYVAQEAPSP 146
           VPVFAQAAGA+LTY A+E PSP
Sbjct: 92  VPVFAQAAGARLTYFARETPSP 113


>PA3445 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport
           systems, periplasmic components Pae Pseudomonas
           aeruginosa
          Length = 323

 Score = 88.2 bits (217), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 54/82 (65%), Gaps = 2/82 (2%)

Query: 65  RIGYQKSSTLLTVLKTNGTLEKLLAPLNVKISWHEFSSGLPLLEALNVGGVDLSADVADT 124
           RIGYQK  TL+ +LK  GTLEK LA   VK+ W EF  G  LLE LNVG +D      +T
Sbjct: 33  RIGYQKYGTLV-LLKARGTLEKRLAEDGVKVQWTEFPGGPQLLEGLNVGSIDFGV-TGET 90

Query: 125 VPVFAQAAGAKLTYVAQEAPSP 146
            PVFAQAAGA L YVA E P+P
Sbjct: 91  PPVFAQAAGADLLYVAYEPPAP 112


>YPO3624 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport
           systems, periplasmic components Ype Yersinia pestis
          Length = 373

 Score = 84.7 bits (208), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 55/91 (60%), Gaps = 3/91 (3%)

Query: 56  AQTGKPVQARIGYQKSSTLLTVLKTNGTLEKLLAPLNVKISWHEFSSGLPLLEALNVGGV 115
           AQ   P Q RIGYQK S  L + KT+  LEK     + +ISW EF +G  +LEALNV  +
Sbjct: 36  AQDNAPAQFRIGYQKGSVNLVLAKTHQLLEKRFP--DTQISWIEFPAGPQMLEALNVNSI 93

Query: 116 DLSADVADTVPVFAQAAGAKLTYVAQEAPSP 146
           DL +   D  P+FAQAAGA L YV  E P P
Sbjct: 94  DLGS-TGDIPPIFAQAAGADLLYVGMEPPKP 123


>ssuA [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport
           systems, periplasmic components Eco Escherichia coli K12
          Length = 333

 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/104 (47%), Positives = 61/104 (58%), Gaps = 5/104 (4%)

Query: 45  AAAGSLALPAFAQTGK--PVQARIGYQKSSTLLTVLKTNGTLEKLLAPLNVKISWHEFSS 102
           A AG L++  FA   +  P   RIGYQK S  + + K++  LEK       KISW EF +
Sbjct: 22  ALAGLLSVSTFAVAAESSPEALRIGYQKGSIGMVLAKSHQLLEKRYP--ESKISWVEFPA 79

Query: 103 GLPLLEALNVGGVDLSADVADTVPVFAQAAGAKLTYVAQEAPSP 146
           G  +LEALNVG +DL +   D  P+FAQAAGA L YV  E P P
Sbjct: 80  GPQMLEALNVGSIDLGS-TGDIPPIFAQAAGADLVYVGVEPPKP 122


>ZycbO [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport
           systems, periplasmic components EcZ Escherichia coli
           O157:H7 EDL933
          Length = 333

 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 52/86 (60%), Gaps = 3/86 (3%)

Query: 61  PVQARIGYQKSSTLLTVLKTNGTLEKLLAPLNVKISWHEFSSGLPLLEALNVGGVDLSAD 120
           P   RIGYQK S  + + K++  LEK       KISW EF +G  +LEALNVG +DL + 
Sbjct: 40  PEALRIGYQKGSIGMVLAKSHQLLEKRYP--QSKISWVEFPAGPQMLEALNVGSIDLGS- 96

Query: 121 VADTVPVFAQAAGAKLTYVAQEAPSP 146
             D  P+FAQAAGA L YV  E P P
Sbjct: 97  TGDIPPIFAQAAGADLLYVGVEPPKP 122