BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0115.p (328 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3449 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transp... 398 e-110 BS_ssuA [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate trans... 124 3e-28 PA3445 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transp... 120 6e-27 RSp1383 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate trans... 114 4e-25 ssuA [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transpor... 106 9e-23 >PA3449 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Pae Pseudomonas aeruginosa Length = 333 Score = 398 bits (1022), Expect = e-110, Method: Compositional matrix adjust. Identities = 190/292 (65%), Positives = 236/292 (80%) Query: 34 IRLDYATYSPPSLVLKKFGWLEEDLKSSGGSVKWVLSQGSNRALEYLNSDSVDFGSTAGL 93 IRLDYA Y+P SL L+KFGWLE+ L SG V+WV SQGSNR+LEYLN+ SVDF STAGL Sbjct: 32 IRLDYAYYAPTSLALRKFGWLEKSLDGSGTRVRWVFSQGSNRSLEYLNAGSVDFASTAGL 91 Query: 94 AALLARANGNPAKAVYVFSRPEWTALAVQKDSTIRSVKELKGKKIAATKGTDPYLFLLRA 153 AA+LARANG+P + VYV SRPEWTAL V+KDS IRS+ ELKG+K+AATKGTDPYLFLLR+ Sbjct: 92 AAVLARANGSPVRTVYVASRPEWTALLVRKDSPIRSLAELKGRKVAATKGTDPYLFLLRS 151 Query: 154 LHENGLAKSDVEILHLQHPDGRVALEQKRVDAWAGLDPHLAASELEAGSRLIYRNVNFNT 213 LH GL K+D+ I+HLQHPDGRVALE+ +VDAWAGLDPH+AASEL+AGSRL+YRN+ FN+ Sbjct: 152 LHSVGLDKNDLRIVHLQHPDGRVALEKGQVDAWAGLDPHMAASELQAGSRLLYRNLGFNS 211 Query: 214 YGFLNVSDSFAAKYPDEVKRVIRAYERARLWIIKNPDETAKLIAEEARLSLPVAQLQLKR 273 YG LNV + FA ++P +++V+ AYE+AR W+I +PDE A+L+AEEA L L VA+LQL R Sbjct: 212 YGVLNVREDFAERHPQLIRQVLAAYEQARHWVIGHPDEAAQLLAEEAGLPLEVARLQLSR 271 Query: 274 NDFSNPQIGKEHIDALRAAAPILLDEELVRSGTDLSRTITALIDPAYSQGLI 325 DFS P G E + AL+AAAPIL DE LVR G D+ + + LI P ++ ++ Sbjct: 272 TDFSQPLPGAEQVAALKAAAPILADERLVRPGVDVQKVVDELIAPQWAAEVV 323 >BS_ssuA [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Bsu Bacillus subtilis Length = 332 Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 82/284 (28%), Positives = 139/284 (48%), Gaps = 3/284 (1%) Query: 32 KTIRLDYATYSPPSLVLKKFGWLEEDLKSSGGSVKWVLSQGSNRALEYLNSDSVDFGSTA 91 K IR+ P L+ K+ GW E+ + G VKWV Q E L +D +DF Sbjct: 31 KEIRIGIQQSLSPLLIAKEKGWFEDAFEKEGIKVKWVEFQSGPPQFEGLAADKLDFSQVG 90 Query: 92 GLAALLARANGNPAKAVYVFSRP-EWTALAVQKDSTIRSVKELKGKKIAATKGTDPYLFL 150 + +A G K + + + + V ++S I+ VK LKGKKIA KG+ + FL Sbjct: 91 NSPVIAGQAAGIDFKEIGLSQDGLKANGILVNQNSGIQDVKGLKGKKIAVAKGSSGFDFL 150 Query: 151 LRALHENGLAKSDVEILHLQHPDGRVALEQKRVDAWAGLDPHLAASELEAGSRLIYRNVN 210 +AL + GL+ +DV I+ LQ + A E VDAW+ +P+L+ ++ G++++ + Sbjct: 151 YKALDQVGLSANDVTIIQLQPDEAASAFENGSVDAWSIWEPYLSLETMKHGAKILVNGES 210 Query: 211 FNTY--GFLNVSDSFAAKYPDEVKRVIRAYERARLWIIKNPDETAKLIAEEARLSLPVAQ 268 + Y GF V F+ ++PDEV R ++ + +A +W ++ DE A L ++ L V + Sbjct: 211 TDLYSPGFTLVRTKFSEEHPDEVVRFLKVFNKAVVWQKEHLDEAADLYSDIKDLDKKVVE 270 Query: 269 LQLKRNDFSNPQIGKEHIDALRAAAPILLDEELVRSGTDLSRTI 312 LK + N I + + A + A + + D+ + Sbjct: 271 NVLKNTEPLNEIISDDIVKAQQETADFQFRTKAIDKKIDVKDVV 314 >PA3445 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Pae Pseudomonas aeruginosa Length = 323 Score = 120 bits (300), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 128/249 (51%), Gaps = 9/249 (3%) Query: 33 TIRLDYATYSPPSLVL-KKFGWLEEDLKSSGGSVKWVLSQGSNRALEYLNSDSVDFGSTA 91 T+R+ Y Y +LVL K G LE+ L G V+W G + LE LN S+DFG T Sbjct: 31 TLRIGYQKYG--TLVLLKARGTLEKRLAEDGVKVQWTEFPGGPQLLEGLNVGSIDFGVTG 88 Query: 92 GLAALLARANGNPAKAVYVFSRPEWT---ALAVQKDSTIRSVKELKGKKIAATKGTDPYL 148 + A+A G A +YV P A+ + KDS IRSV ELKG+K+A KG++ + Sbjct: 89 ETPPVFAQAAG--ADLLYVAYEPPAPTSEAILLPKDSPIRSVAELKGRKVALNKGSNVHY 146 Query: 149 FLLRALHENGLAKSDVEILHLQHPDGRVALEQKRVDAWAGLDPHLAASELEAGSRLIYRN 208 L+RAL + GL SD++ ++L D R A E+ VDAW DP+ AA+E + +R++ Sbjct: 147 LLVRALEQAGLKYSDIQPVYLPPADARAAFERHSVDAWVIWDPYQAAAEKQLSARVLVDG 206 Query: 209 VNF-NTYGFLNVSDSFAAKYPDEVKRVIRAYERARLWIIKNPDETAKLIAEEARLSLPVA 267 + + F + ++A ++P + +++ W NP + + +A L + Sbjct: 207 RELVDNHQFYLATRTYAQRHPQVLDKLVDEIREVGDWSRANPQQVTEQVAPLLGLPADIT 266 Query: 268 QLQLKRNDF 276 +KR + Sbjct: 267 LTAVKRQGY 275 >RSp1383 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Rso Ralstonia solanacearum Length = 334 Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 83/280 (29%), Positives = 135/280 (48%), Gaps = 7/280 (2%) Query: 27 AADAPKTIRLDYATYSPPSLVLKKFGWLEEDLKSSGGSVKWVLSQGSNRALEYLNSDSVD 86 AAD T+R+ + + VLK G L+ L G ++W + LE LN+ S+D Sbjct: 37 AADPAGTVRIGFQKAGLLA-VLKAQGALDTPLAELGYRIEWKEFPAGPQLLEALNAGSID 95 Query: 87 FGSTAGLAALLARANGNPAKAVYVFSRPEWTA---LAVQKDSTIRSVKELKGKKIAATKG 143 FG T A+ A+A G A+ VYV + P +A L V+ S R V +LKGK+IA KG Sbjct: 96 FGYTGAPPAVFAQAAG--ARFVYVGAEPGASANEALFVRDGSPARGVADLKGKRIALQKG 153 Query: 144 TDPYLFLLRALHENGLAKSDVEILHLQHPDGRVALEQKRVDAWAGLDPHLAASELEAGSR 203 + L++ L GL D++ ++L + R A E VDAW DP+ A ++ R Sbjct: 154 SSSNYLLVQLLKRAGLTVQDIQPIYLPPAEARAAFESGAVDAWVVWDPYYALAQTALKVR 213 Query: 204 LIYRNVNF-NTYGFLNVSDSFAAKYPDEVKRVIRAYERARLWIIKNPDETAKLIAEEARL 262 + + + F + F +P V ++ LW+ ++P ETA L++ + + Sbjct: 214 TLADYTGLPSPFNFYEATPGFVQAHPRAVNAILAQLRTTGLWVNRHPRETAALLSPKLGI 273 Query: 263 SLPVAQLQLKRNDFSNPQIGKEHIDALRAAAPILLDEELV 302 + PV + L+R + I E I A + A + ++L+ Sbjct: 274 APPVVETWLRRVPYGVTPITPEVIAAQQQVADLFHQQKLI 313 >ssuA [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Eco Escherichia coli K12 Length = 333 Score = 106 bits (264), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 8/244 (3%) Query: 27 AADAPKTIRLDYATYSPPSLVLKKFGWLEEDLKSSGGSVKWVLSQGSNRALEYLNSDSVD 86 A +P+ +R+ Y S ++ K LE+ S + WV + LE LN S+D Sbjct: 36 AESSPEALRIGYQKGSIGMVLAKSHQLLEKRYPES--KISWVEFPAGPQMLEALNVGSID 93 Query: 87 FGSTAGLAALLARANGNPAKAVYVF---SRPEWTALAVQKDSTIRSVKELKGKKIAATKG 143 GST + + A+A G A VYV +P+ + V ++S I++V +LKG K+A KG Sbjct: 94 LGSTGDIPPIFAQAAG--ADLVYVGVEPPKPKAEVILVAENSPIKTVADLKGHKVAFQKG 151 Query: 144 TDPYLFLLRALHENGLAKSDVEILHLQHPDGRVALEQKRVDAWAGLDPHLAASELEAGSR 203 + + LLRAL + GL +D++ +L D R A +Q VDAWA DP+ +A+ L+ G R Sbjct: 152 SSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGNVDAWAIWDPYYSAALLQGGVR 211 Query: 204 LIYRNVNFNTYG-FLNVSDSFAAKYPDEVKRVIRAYERARLWIIKNPDETAKLIAEEARL 262 ++ + N G F + +A K ++ V+ + A +++ L+A+ L Sbjct: 212 VLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTMGL 271 Query: 263 SLPV 266 PV Sbjct: 272 PAPV 275