BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0112.p (366 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0551 [L] COG0468 RecA/RadA recombinase Rso Ralstonia solanace... 528 e-150 BMEI0787 [L] COG0468 RecA/RadA recombinase Bme Brucella melitensis 503 e-142 SMc00760 [L] COG0468 RecA/RadA recombinase Sme Sinorhizobium mel... 495 e-140 mlr0030 [L] COG0468 RecA/RadA recombinase Mlo Mesorhizobium loti 494 e-139 AGc3441 [L] COG0468 RecA/RadA recombinase Atu Agrobacterium tume... 492 e-139 >RSc0551 [L] COG0468 RecA/RadA recombinase Rso Ralstonia solanacearum Length = 352 Score = 528 bits (1361), Expect = e-150, Method: Compositional matrix adjust. Identities = 282/341 (82%), Positives = 307/341 (90%), Gaps = 2/341 (0%) Query: 2 DDKKSAN-NTEKGKALAAALAQIEKQFGKGSVMRMEDGAVLEEIQVVSTGSLGLDIALGV 60 D KK+A+ + EK KALAAALAQIEKQFGKGS+M+M D V E +QVVSTGSLGLD+ALGV Sbjct: 3 DGKKAASMSAEKQKALAAALAQIEKQFGKGSIMKMGDAEV-EPVQVVSTGSLGLDVALGV 61 Query: 61 GGLPRGRVIEIYGPESSGKTTLTLQAIAEMQKIGGTCAFIDAEHALDVTYAQKLGVNLSD 120 GGLPRGRV+EIYGPESSGKTTLTLQ +AEMQK+GGTCAFIDAEHALDVTYA KLGV + D Sbjct: 62 GGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVTYADKLGVKVPD 121 Query: 121 LLISQPDTGEQALEITDALVRSGGVDLIVIDSVAALTPRAEIEGDMGDSLPGLQARLMSQ 180 LLISQPDTGEQALEI DALVRSG VDLIVIDSVAAL P+AEIEG+MGD+LPGLQARLMSQ Sbjct: 122 LLISQPDTGEQALEIADALVRSGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQ 181 Query: 181 ALRKLTGSINRTSTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKS 240 ALRKLTG+I RT+ VIFINQIRMKIGVMFG+PETTTGGNALKFYASVRLDIRR GSIK Sbjct: 182 ALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKK 241 Query: 241 GDEVIGSETKVKVVKNKVAPPFREAHFDILYGEGTSREGEILDLGSDAKIVEKSGAWYSY 300 GDEV+G+ETKVKVVKNKVAPPFREA FDILYG G SREGEI+DLG +AK+VEKSGAWYSY Sbjct: 242 GDEVVGNETKVKVVKNKVAPPFREAIFDILYGAGVSREGEIIDLGVEAKVVEKSGAWYSY 301 Query: 301 NGERIGQGKDNARNFLKERPELAREIENKVRASLGVPELAA 341 NGERIGQG+DN R FL+E ELAREIENKVR LGV + A Sbjct: 302 NGERIGQGRDNCREFLRENAELAREIENKVREHLGVTPMGA 342 >BMEI0787 [L] COG0468 RecA/RadA recombinase Bme Brucella melitensis Length = 378 Score = 503 bits (1295), Expect = e-142, Method: Compositional matrix adjust. Identities = 243/347 (70%), Positives = 292/347 (84%), Gaps = 10/347 (2%) Query: 8 NNTEKGKALAAALAQIEKQFGKGSVMRMEDGAVLEEIQVVSTGSLGLDIALGVGGLPRGR 67 N+ +K KAL AAL+QIE+ FGKGS+MR+ + EI+ VSTGSL LDIALGVGGLP+GR Sbjct: 29 NSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVEIETVSTGSLSLDIALGVGGLPKGR 88 Query: 68 VIEIYGPESSGKTTLTLQAIAEMQKIGGTCAFIDAEHALDVTYAQKLGVNLSDLLISQPD 127 ++EIYGPESSGKTTL L IAE QK GG CAF+DAEHALD YA+KLGV+L +LLISQPD Sbjct: 89 IVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPD 148 Query: 128 TGEQALEITDALVRSGGVDLIVIDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTG 187 TGEQALEITD LVRSG +D++V+DSVAALTPRAEIEG+MGDSLPGLQARLMSQALRKLTG Sbjct: 149 TGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTG 208 Query: 188 SINRTSTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKSGDEVIGS 247 SI+R++ VIFINQIRMKIGVMFG+PETTTGGNALKFYASVRLDIRR GSIK DEV+G+ Sbjct: 209 SISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGN 268 Query: 248 ETKVKVVKNKVAPPFREAHFDILYGEGTSREGEILDLGSDAKIVEKSGAWYSYNGERIGQ 307 +T+VKVVKNK+APPF++ FDI+YG G S+ GE++DLG A +VEKSGAW+SYN +R+GQ Sbjct: 269 QTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQRLGQ 328 Query: 308 GKDNARNFLKERPELAREIENKVRASLGV----------PELAASGA 344 G++NA+ +LK+ PE+AREIE +R + G+ PE A+GA Sbjct: 329 GRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGGPEEDAAGA 375 >SMc00760 [L] COG0468 RecA/RadA recombinase Sme Sinorhizobium meliloti Length = 348 Score = 495 bits (1275), Expect = e-140, Method: Compositional matrix adjust. Identities = 235/326 (72%), Positives = 283/326 (86%) Query: 11 EKGKALAAALAQIEKQFGKGSVMRMEDGAVLEEIQVVSTGSLGLDIALGVGGLPRGRVIE 70 +K KAL AAL+QIE+ FGKGS+M++ + EI+ VSTGSLGLDIALG+GGLP+GR+IE Sbjct: 2 DKSKALEAALSQIERSFGKGSIMKLGAKDSVVEIETVSTGSLGLDIALGIGGLPKGRIIE 61 Query: 71 IYGPESSGKTTLTLQAIAEMQKIGGTCAFIDAEHALDVTYAQKLGVNLSDLLISQPDTGE 130 IYGPESSGKTTL LQ IAE QK GG C F+DAEHALD YA+KLGV+L +LLISQPDTGE Sbjct: 62 IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 121 Query: 131 QALEITDALVRSGGVDLIVIDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTGSIN 190 QALEITD LVRSG +D++VIDSVAAL PRAEIEG+MGDSLPG+QARLMSQALRKLT SI+ Sbjct: 122 QALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 181 Query: 191 RTSTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKSGDEVIGSETK 250 +++ VIFINQIRMKIGVMFG+PETTTGGNALKFYASVRLDIRR GS+K +EV+G++T+ Sbjct: 182 KSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQTR 241 Query: 251 VKVVKNKVAPPFREAHFDILYGEGTSREGEILDLGSDAKIVEKSGAWYSYNGERIGQGKD 310 VKVVKNK+APPF++ FDI+YGEG S+ GE++DLG A IVEKSGAW+SYN +R+GQG++ Sbjct: 242 VKVVKNKMAPPFKQVEFDIMYGEGVSKTGELIDLGVKAGIVEKSGAWFSYNSQRLGQGRE 301 Query: 311 NARNFLKERPELAREIENKVRASLGV 336 NA+ FL+E PEL REIE +R + G+ Sbjct: 302 NAKLFLRENPELLREIETALRQNAGL 327 >mlr0030 [L] COG0468 RecA/RadA recombinase Mlo Mesorhizobium loti Length = 365 Score = 494 bits (1273), Expect = e-139, Method: Compositional matrix adjust. Identities = 236/327 (72%), Positives = 282/327 (86%) Query: 10 TEKGKALAAALAQIEKQFGKGSVMRMEDGAVLEEIQVVSTGSLGLDIALGVGGLPRGRVI 69 +K KAL AAL+QIE+ FGKGS+MR+ + EI+ V TGSLGLDIALGVGGLPRGR+I Sbjct: 14 VDKSKALDAALSQIERAFGKGSIMRLGANEQVVEIETVPTGSLGLDIALGVGGLPRGRII 73 Query: 70 EIYGPESSGKTTLTLQAIAEMQKIGGTCAFIDAEHALDVTYAQKLGVNLSDLLISQPDTG 129 EIYGPESSGKTTL L +AE QK GG CAF+DAEHALD YA+KLGV+L +LLISQPDTG Sbjct: 74 EIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTG 133 Query: 130 EQALEITDALVRSGGVDLIVIDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTGSI 189 EQALEI D LVRSG +D++V+DSVAALTPRAEIEG+MGDSLPGLQARLMSQALRKLT SI Sbjct: 134 EQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASI 193 Query: 190 NRTSTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKSGDEVIGSET 249 +R++T VIFINQIRMKIGVMFG+PETTTGGNALKFYASVRLDIRR GS+K DEV+G++T Sbjct: 194 SRSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDRDEVVGNQT 253 Query: 250 KVKVVKNKVAPPFREAHFDILYGEGTSREGEILDLGSDAKIVEKSGAWYSYNGERIGQGK 309 +VKVVKNK+APPF+ FDI+YGEG S+ GE++DLG A +VEKSGAW+SYN +R+GQG+ Sbjct: 254 RVKVVKNKLAPPFKVVEFDIMYGEGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQGR 313 Query: 310 DNARNFLKERPELAREIENKVRASLGV 336 +NA+ FL++ P+ AREIE +R + G+ Sbjct: 314 ENAKLFLRDNPDTAREIELALRQNAGL 340 >AGc3441 [L] COG0468 RecA/RadA recombinase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 416 Score = 492 bits (1266), Expect = e-139, Method: Compositional matrix adjust. Identities = 233/328 (71%), Positives = 282/328 (85%) Query: 9 NTEKGKALAAALAQIEKQFGKGSVMRMEDGAVLEEIQVVSTGSLGLDIALGVGGLPRGRV 68 + +K KAL AAL+QIE+ FGKGS+M++ + E++ VSTGSL LDIALG+GGLP+GR+ Sbjct: 66 SVDKSKALEAALSQIERSFGKGSIMKLGSNENVVEVETVSTGSLSLDIALGIGGLPKGRI 125 Query: 69 IEIYGPESSGKTTLTLQAIAEMQKIGGTCAFIDAEHALDVTYAQKLGVNLSDLLISQPDT 128 IEIYGPESSGKTTL LQ IAE QK GG CAF+DAEHALD YA+KLGV+L LLISQPDT Sbjct: 126 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 185 Query: 129 GEQALEITDALVRSGGVDLIVIDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTGS 188 GEQALEITD LVRSG VD++VIDSVAALTPRAEIEG+MGDSLPGLQARLMSQALRKLT S Sbjct: 186 GEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 245 Query: 189 INRTSTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKSGDEVIGSE 248 I+++ VIFINQIRMKIGVMFG+PETTTGGNALKFYASVRLDIRR G++K +EV+G++ Sbjct: 246 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 305 Query: 249 TKVKVVKNKVAPPFREAHFDILYGEGTSREGEILDLGSDAKIVEKSGAWYSYNGERIGQG 308 T+VKVVKNK+APPF++ FDI+YGEG S+ GE++DLG A IVEKSGAW+SYN +R+GQG Sbjct: 306 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 365 Query: 309 KDNARNFLKERPELAREIENKVRASLGV 336 ++NA+ FL++ P+ A EIE +R + G+ Sbjct: 366 RENAKTFLRDNPDTANEIELALRQNAGL 393