BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0108.p         (83 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0555 [C] COG0074 Succinyl-CoA synthetase, alpha subunit Rso R...   154   4e-38
BH2469 [C] COG0074 Succinyl-CoA synthetase, alpha subunit Bha Ba...   105   3e-23
SA1089 [C] COG0074 Succinyl-CoA synthetase, alpha subunit Sau St...   102   2e-22
BS_sucD [C] COG0074 Succinyl-CoA synthetase, alpha subunit Bsu B...   101   5e-22
NMA1154 [C] COG0074 Succinyl-CoA synthetase, alpha subunit NmA N...    99   2e-21

>RSc0555 [C] COG0074 Succinyl-CoA synthetase, alpha subunit Rso Ralstonia
           solanacearum
          Length = 293

 Score =  154 bits (390), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 80/83 (96%)

Query: 1   MIGEIGGPDEANASYWVKDNMKKPVIGFIAGVTAPPGKRMGHAGALISGGADTAEAKLAI 60
           MIGEIGGPDEANA+ W+KDNMKKPV+GFIAGVTAPPGKRMGHAGALISGGADTA+AKL I
Sbjct: 211 MIGEIGGPDEANAARWIKDNMKKPVVGFIAGVTAPPGKRMGHAGALISGGADTAQAKLDI 270

Query: 61  MEECGIKATRNPSEMARLLKSVL 83
           MEECGIKAT+NPSEM RLLK++L
Sbjct: 271 MEECGIKATKNPSEMGRLLKALL 293


>BH2469 [C] COG0074 Succinyl-CoA synthetase, alpha subunit Bha Bacillus
           halodurans
          Length = 302

 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/83 (61%), Positives = 58/83 (69%)

Query: 1   MIGEIGGPDEANASYWVKDNMKKPVIGFIAGVTAPPGKRMGHAGALISGGADTAEAKLAI 60
           MIGEIGG  E  A+ W+K NM KPV+GFI G TAPPGKRMGHAGA+ISGG  TA  K+  
Sbjct: 206 MIGEIGGTAEEEAAEWIKANMTKPVVGFIGGQTAPPGKRMGHAGAIISGGKGTAAEKIKT 265

Query: 61  MEECGIKATRNPSEMARLLKSVL 83
           +E CG+K    PS M   L SVL
Sbjct: 266 LESCGVKVAETPSVMGETLISVL 288


>SA1089 [C] COG0074 Succinyl-CoA synthetase, alpha subunit Sau
           Staphylococcus aureus N315
          Length = 302

 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/79 (60%), Positives = 56/79 (70%)

Query: 1   MIGEIGGPDEANASYWVKDNMKKPVIGFIAGVTAPPGKRMGHAGALISGGADTAEAKLAI 60
           MIGEIGG  E  A+ W+K NM KPV+GFI G TAPPGKRMGHAGA+ISGG  TAE K+  
Sbjct: 206 MIGEIGGTAEEEAAEWIKANMTKPVVGFIGGQTAPPGKRMGHAGAIISGGKGTAEEKIKT 265

Query: 61  MEECGIKATRNPSEMARLL 79
           +  CG+K    PSE+   L
Sbjct: 266 LNSCGVKTAATPSEIGSTL 284


>BS_sucD [C] COG0074 Succinyl-CoA synthetase, alpha subunit Bsu Bacillus
           subtilis
          Length = 300

 Score =  101 bits (251), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 57/83 (68%)

Query: 1   MIGEIGGPDEANASYWVKDNMKKPVIGFIAGVTAPPGKRMGHAGALISGGADTAEAKLAI 60
           MIGEIGG  E  A+ WVK NM KPV+GFI G TAPPGKRMGHAGA+ISGG  TA+ K+  
Sbjct: 206 MIGEIGGTAEEEAAEWVKANMTKPVVGFIGGKTAPPGKRMGHAGAIISGGKGTADEKIKT 265

Query: 61  MEECGIKATRNPSEMARLLKSVL 83
           +  CGI+    PS M   L  VL
Sbjct: 266 LNACGIEVAETPSVMGETLIKVL 288


>NMA1154 [C] COG0074 Succinyl-CoA synthetase, alpha subunit NmA Neisseria
           meningitidis Z2491
          Length = 296

 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 61/83 (73%)

Query: 1   MIGEIGGPDEANASYWVKDNMKKPVIGFIAGVTAPPGKRMGHAGALISGGADTAEAKLAI 60
           MIGEIGG  E  A+ +++ N+ KPV+G+IAGVTAP GKRMGHAGA+ISGG  TAE K A 
Sbjct: 208 MIGEIGGTAEEEAAEYIQSNVSKPVVGYIAGVTAPKGKRMGHAGAIISGGKGTAEEKFAA 267

Query: 61  MEECGIKATRNPSEMARLLKSVL 83
            E+ GI  TR+P+E+   +  VL
Sbjct: 268 FEKAGIAYTRSPAELGTTMLEVL 290