BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0066.p         (105 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0195a [C] COG3288 NAD/NADP transhydrogenase alpha subunit Pae ...   154   4e-38
RSp0950 [C] COG3288 NAD/NADP transhydrogenase alpha subunit Rso ...   153   1e-37
RSc2732 [C] COG3288 NAD/NADP transhydrogenase alpha subunit Rso ...   147   6e-36
SMc03939 [C] COG3288 NAD/NADP transhydrogenase alpha subunit Sme...   120   5e-28
mlr5183 [C] COG3288 NAD/NADP transhydrogenase alpha subunit Mlo ...   117   5e-27

>PA0195a [C] COG3288 NAD/NADP transhydrogenase alpha subunit Pae Pseudomonas
           aeruginosa
          Length = 105

 Score =  154 bits (390), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 77/95 (81%), Positives = 85/95 (89%)

Query: 3   VSHTIINLIIFVLAIYVGYHVVWTVTPALHTPLMAVTNAISAIIIIGAMLAAGLTEGPVG 62
           +S  I NLIIFVLA+YVGYHVVW VTPALHTPLMAVTNAISAI+I+GAMLAA LT  P+G
Sbjct: 7   ISDGIYNLIIFVLAVYVGYHVVWNVTPALHTPLMAVTNAISAIVIVGAMLAAALTVTPLG 66

Query: 63  RIAGTLAVALAAVNVFGGFMVTQRMLEMFKKKEPK 97
           +  GTLAVALAAVNVFGGF+VT+RMLEMFKKK PK
Sbjct: 67  KAMGTLAVALAAVNVFGGFLVTRRMLEMFKKKAPK 101


>RSp0950 [C] COG3288 NAD/NADP transhydrogenase alpha subunit Rso Ralstonia
           solanacearum
          Length = 108

 Score =  153 bits (386), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/103 (73%), Positives = 87/103 (84%)

Query: 3   VSHTIINLIIFVLAIYVGYHVVWTVTPALHTPLMAVTNAISAIIIIGAMLAAGLTEGPVG 62
           VSHTI++L  FVLA+YVGYHVVW VTPALHTPLMAVTNAISAI+I+GAMLAA LTE   G
Sbjct: 5   VSHTIVSLTTFVLAVYVGYHVVWNVTPALHTPLMAVTNAISAIVIVGAMLAAALTETVPG 64

Query: 63  RIAGTLAVALAAVNVFGGFMVTQRMLEMFKKKEPKTKTDKAGA 105
           ++ G LAVALAAVNVFGGF+VT+RMLEMF+KK+ K      GA
Sbjct: 65  KVIGVLAVALAAVNVFGGFLVTRRMLEMFRKKDKKPAAANGGA 107


>RSc2732 [C] COG3288 NAD/NADP transhydrogenase alpha subunit Rso Ralstonia
           solanacearum
          Length = 107

 Score =  147 bits (371), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 82/99 (82%), Positives = 90/99 (90%)

Query: 3   VSHTIINLIIFVLAIYVGYHVVWTVTPALHTPLMAVTNAISAIIIIGAMLAAGLTEGPVG 62
           V+HT+INLIIFVLAIYVGYHVVWTVTPALHTPLMAVTNAISAIII+GAMLAAGLT+  +G
Sbjct: 4   VNHTVINLIIFVLAIYVGYHVVWTVTPALHTPLMAVTNAISAIIIVGAMLAAGLTQTGLG 63

Query: 63  RIAGTLAVALAAVNVFGGFMVTQRMLEMFKKKEPKTKTD 101
           R  G +AVALAAVNVFGGF+VTQRMLEMFKKK PK   +
Sbjct: 64  RTMGVVAVALAAVNVFGGFLVTQRMLEMFKKKAPKAGKN 102


>SMc03939 [C] COG3288 NAD/NADP transhydrogenase alpha subunit Sme
           Sinorhizobium meliloti
          Length = 136

 Score =  120 bits (302), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 75/89 (84%)

Query: 7   IINLIIFVLAIYVGYHVVWTVTPALHTPLMAVTNAISAIIIIGAMLAAGLTEGPVGRIAG 66
           +  L IFVLAI+VGY+VVW+VTPALHTPLMAVTNAIS++I++GA+LA G++   +    G
Sbjct: 47  VFRLAIFVLAIFVGYYVVWSVTPALHTPLMAVTNAISSVIVVGALLAVGISASGLATGFG 106

Query: 67  TLAVALAAVNVFGGFMVTQRMLEMFKKKE 95
            +A+ LA+VN+FGGF+VTQRML M+KKKE
Sbjct: 107 FVALVLASVNIFGGFLVTQRMLAMYKKKE 135


>mlr5183 [C] COG3288 NAD/NADP transhydrogenase alpha subunit Mlo
           Mesorhizobium loti
          Length = 142

 Score =  117 bits (294), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 55/89 (61%), Positives = 72/89 (80%)

Query: 7   IINLIIFVLAIYVGYHVVWTVTPALHTPLMAVTNAISAIIIIGAMLAAGLTEGPVGRIAG 66
           +    IFVLAI+VGY+VVW+VTPALHTPLMAVTNAIS++I++GA+LA G+    V    G
Sbjct: 53  VFRFAIFVLAIFVGYYVVWSVTPALHTPLMAVTNAISSVIVVGALLAVGIAASGVAAGFG 112

Query: 67  TLAVALAAVNVFGGFMVTQRMLEMFKKKE 95
            +A+ L +VN+FGGF+VTQRML M+KKK+
Sbjct: 113 FVALMLVSVNIFGGFLVTQRMLAMYKKKD 141