BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0037.p (375 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEI0218 [K] COG0583 Transcriptional regulator Bme Brucella meli... 123 5e-28 SMc03122 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 118 2e-26 RSp0018 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 114 4e-25 BMEII0345 [K] COG0583 Transcriptional regulator Bme Brucella mel... 110 4e-24 AGc354 [K] COG0583 Transcriptional regulator Atu Agrobacterium t... 109 1e-23 >BMEI0218 [K] COG0583 Transcriptional regulator Bme Brucella melitensis Length = 308 Score = 123 bits (309), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 69/166 (41%), Positives = 96/166 (57%), Gaps = 2/166 (1%) Query: 15 AADWEGLRTFAAFIESGSFSGAARVLGVTHATVSRRLQTLEHALHGPLFTRRGDDTELTR 74 A +W+ +R F A SG GAAR LG+ H TV+RRL LE AL L TRR + + LT Sbjct: 15 AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 74 Query: 75 LGETVLSAAREMQAQTAQLARRLAGEDIRMEGKLRIASTEAMATMFLAPRLPALLERWPQ 134 GE L AA M+A+ ++ DI + G +RI + + FLAPRL L +++P Sbjct: 75 AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 134 Query: 135 LDIEFSMSHQTVSLARRDADLAIRFARPQDGDLIARKLGKISYFLC 180 L I+ ++ SL+RR+AD+AI RP G L+AR+L + Y LC Sbjct: 135 LTIQLVPVPRSFSLSRREADIAITVERPDQGRLVARRL--VDYTLC 178 >SMc03122 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 315 Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 118/237 (49%), Gaps = 11/237 (4%) Query: 18 WEGLRTFAAFIESGSFSGAARVLGVTHATVSRRLQTLEHALHGPLFTRRGDDTELTRLGE 77 W+ L+ F A +G S AAR L +HATVSRR+ LE AL LF R LT +G+ Sbjct: 7 WDDLQFFLAVARTGQLSTAARRLRTSHATVSRRIDRLEFALKVKLFERNPRGYVLTTMGQ 66 Query: 78 TVLSAAREMQAQTAQLARRLAGEDIRMEGKLRIASTEAMATMFLAPRLPALLERWPQLDI 137 + A M+ +T QL ++ G +R+++ E FLA RL ER+P + + Sbjct: 67 RFVETAERMERETEQLQLDISDGMTAQRGVVRLSTLEGFGNFFLADRLGEFAERYPNISL 126 Query: 138 EFSMSHQTVSLARRDADLAIRFARPQDGDLIARKLGKISYFLCGSRERVAEWRARAAPGS 197 E Q +SL+R++AD+A+ A P+ G A L + + G+R +A G Sbjct: 127 ELVAIQQIMSLSRKEADIAVALAAPKAGAYHAEVLTPYTLHVYGARSYLA--------GQ 178 Query: 198 APFIGXRARAAPGSAPFIGFDDGVPDIPETQWLADHAGGNPVRFRSTSLVTQCMAAR 254 P R R+ GS F+G+ D + P +L + G F+S+S++TQ A R Sbjct: 179 PPI---RTRSDLGSHRFVGYIDDMIFTPGLDYLGEIQPGLRAHFQSSSILTQLKAVR 232 >RSp0018 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 302 Score = 114 bits (285), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 110/234 (47%), Gaps = 28/234 (11%) Query: 17 DWEGLRTFAAFIESGSFSGAARVLGVTHATVSRRLQTLEHALHGPLFTRRGDDTELTRLG 76 W+ +R F A GS S AAR LGV H TV+RR LE AL LF R LT G Sbjct: 15 QWDDVRHFLALAREGSLSAAARRLGVEHTTVARRADALEQALGVRLFDRLPRGWRLTAEG 74 Query: 77 ETVLSAAREMQAQTAQLARRLAGEDIRMEGKLRIASTEAMATMFLAPRLPALLERWPQLD 136 + A M+ + A LAR AG + G +R+++ +A+ +AP L L RWP +D Sbjct: 75 GALAEQAGRMEQEAAGLARIAAGAG-NLRGTVRVSAPPTLASHVIAPNLATLRRRWPGID 133 Query: 137 IEFSMSHQTVSLARRDADLAIRFARPQDGDLIARKLGKISYFLCGSRERV----AEWRAR 192 + + +L +ADLA+R +RP L R LG + Y L + E + AEW Sbjct: 134 LVLLGEKRNANLMAHEADLAVRLSRPTSAALATRPLGDLGYGLYATPEVLTRPEAEWE-- 191 Query: 193 AAPGSAPFIGXRARAAPGSAPFIGFDDGVPDIPETQWLADHAGGNPVRFRSTSL 246 FIG+DD + +P+ +WLA +AG + R + L Sbjct: 192 ---------------------FIGYDDTLRHMPQQRWLAAYAGARRMVLRCSDL 224 >BMEII0345 [K] COG0583 Transcriptional regulator Bme Brucella melitensis Length = 316 Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 113/238 (47%), Gaps = 11/238 (4%) Query: 18 WEGLRTFAAFIESGSFSGAARVLGVTHATVSRRLQTLEHALHGPLFTRRGDDTELTRLGE 77 W+ L+ F A +G S AAR L +H TV RR+ LE AL LF R LT +GE Sbjct: 18 WDDLQYFLAVARTGQLSTAARQLRTSHVTVLRRIDRLEQALSTKLFERNPRGYLLTPMGE 77 Query: 78 TVLSAAREMQAQTAQLARRLAGEDIRMEGKLRIASTEAMATMFLAPRLPALLERWPQLDI 137 ++ A M+ + + G + G +R+++ E FLA RLP L + +P L + Sbjct: 78 RLVEPAEVMEREAMKFQTEATGNLAALSGVVRLSTLEGFGNFFLADRLPVLAQSYPSLFV 137 Query: 138 EFSMSHQTVSLARRDADLAIRFARPQDGDLIARKLGKISYFLCGSRERVAEWRARAAPGS 197 E Q +SL+RR+ +L+I P++G + KL F+ G R ++ AR P Sbjct: 138 EVVTIQQIMSLSRRETELSITLHMPRNGPYHSEKLMPYRLFIYGHR----DYLARHPP-- 191 Query: 198 APFIGXRARAAPGSAPFIGFDDGVPDIPETQWLADHAGGNPVRFRSTSLVTQCMAARA 255 R R PFIG+ D + P ++ + G ++S+S+ Q +A + Sbjct: 192 -----IRTREDMTGHPFIGYIDDMVFTPGLDYMREILPGQRCTYQSSSIHAQLIATQT 244 >AGc354 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 293 Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 64/172 (37%), Positives = 94/172 (54%) Query: 17 DWEGLRTFAAFIESGSFSGAARVLGVTHATVSRRLQTLEHALHGPLFTRRGDDTELTRLG 76 +W+ +R F A SG A++ LG+ HAT+SRRL LE AL LF RR + E+T G Sbjct: 2 NWDDVRIFLAVARSGQILAASKRLGLNHATLSRRLTLLEQALKTQLFIRRTNGCEMTEEG 61 Query: 77 ETVLSAAREMQAQTAQLARRLAGEDIRMEGKLRIASTEAMATMFLAPRLPALLERWPQLD 136 + L AA M+ + L D + G +RI + + + FLAPRL L R+P L Sbjct: 62 QRFLGAAERMETEMLNAQANLGRVDTAVAGTVRIGAPDGLGVSFLAPRLGRLTARYPDLK 121 Query: 137 IEFSMSHQTVSLARRDADLAIRFARPQDGDLIARKLGKISYFLCGSRERVAE 188 I+ ++ SL++R+AD+AI RP+ G L+ KL S L S + +A+ Sbjct: 122 IQLVPVPRSFSLSQREADIAITIERPEQGRLMFSKLTDYSLGLYASADYLAD 173