BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0013.p (409 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1871 [L] COG0582 Integrase Rso Ralstonia solanacearum 491 e-138 RSc0968 [L] COG0582 Integrase Rso Ralstonia solanacearum 349 7e-96 mll6432 [L] COG0582 Integrase Mlo Mesorhizobium loti 328 2e-89 YPO0887 [L] COG0582 Integrase Ype Yersinia pestis 320 4e-87 ECs0289 [L] COG0582 Integrase Ecs Escherichia coli O157:H7 303 5e-82 >RSc1871 [L] COG0582 Integrase Rso Ralstonia solanacearum Length = 405 Score = 491 bits (1263), Expect = e-138, Method: Compositional matrix adjust. Identities = 240/401 (59%), Positives = 303/401 (75%), Gaps = 3/401 (0%) Query: 8 LKDLQLKNAKPKDKPYKLSDGGGLYLLVAPTGGKGWRLKYLFQGKEKLLSLGTYPEIGLQ 67 L D ++NAKP DKP KL DGGGL+L V P G + WRLKY F GKEKLL++G YPEIGL+ Sbjct: 3 LTDTAIRNAKPADKPIKLFDGGGLFLHVTPAGQRYWRLKYRFAGKEKLLAIGVYPEIGLK 62 Query: 68 EARKRRDNNKELLASGIDPSDNRKALKLAGAERAANNFEAIAREWLSTHKDGWAKTHYEK 127 EAR RR+ K LL G+DPS RK K+A ERAAN+FEA+AREW + + GW++++ +K Sbjct: 63 EARDRREEAKRLLGEGVDPSVERKVRKVATVERAANSFEAVAREWHAKYAPGWSESNAKK 122 Query: 128 IVGRFENDVFPYLGRKPIAAITAPDLLSVIRKIESRGVLETAHRALANCGQVFRYAVATG 187 ++ R ENDVFP+LG +PIA + AP+LL V R++ESRG L+TAHR L CGQ+FRYAVATG Sbjct: 123 VLARLENDVFPWLGGRPIAEVKAPELLGVARRVESRGALDTAHRVLQTCGQIFRYAVATG 182 Query: 188 RTERDPTGDLRGALPSVKSRRTHFAAITDPKEVGRLLRALNGYDGSPTVCAALRLAPLVF 247 R ERDP+GDLRGALP K + H+AA TDPKEV LLR +G+ G+ V AL LAP+VF Sbjct: 183 RAERDPSGDLRGALPPAKGK--HYAAPTDPKEVAGLLRMFDGFTGTFIVKCALLLAPMVF 240 Query: 248 VRPGELRAAEWAHIDLDAAEWRYTVTKTNTQHIVPLSTQAVEILKELQPLTGNGQYIFPS 307 VRPGELRAAEWA IDLDAAEWR+ +K + HIVPLSTQAV IL++L LTG+G+Y+FP Sbjct: 241 VRPGELRAAEWADIDLDAAEWRFVSSKRDVAHIVPLSTQAVAILRDLHALTGHGRYLFPG 300 Query: 308 PRSKSRPMSDNAILSAMRRMDI-SKDVMSGHGFRAMARTILDEVLRERVDLIEHQLAHAV 366 R K++PMS+ AI +A++RM I ++ +GHG R +ARTIL EVL ++IE QLAH Sbjct: 301 ARDKAKPMSEAAINAALKRMGIDTQKEFTGHGVRPIARTILREVLGFEAEVIELQLAHRK 360 Query: 367 RDPNGRAYNRTSHLPERKRMMQRWADYLDSLGNGAEVVQLR 407 +DPNG AY+R + L RK+MMQ WADYLD L GA+V+ L+ Sbjct: 361 KDPNGAAYDRVAFLAVRKQMMQAWADYLDELKAGAKVLPLK 401 >RSc0968 [L] COG0582 Integrase Rso Ralstonia solanacearum Length = 391 Score = 349 bits (895), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 182/395 (46%), Positives = 240/395 (60%), Gaps = 8/395 (2%) Query: 7 PLKDLQLKNAKPKDKPYKLSDGGGLYLLVAPTGGKGWRLKYLFQGKEKLLSLGTYPEIGL 66 PL DL +NAKP+DKPY+L+DG G+YL V P G K WRLKY GKEK L+LG YP +GL Sbjct: 2 PLTDLSARNAKPQDKPYRLADGLGMYLEVMPNGSKYWRLKYRIAGKEKRLALGVYPSVGL 61 Query: 67 QEARKRRDNNKELLASGIDPSDNRKALKLAGAERAANNFEAIAREWLSTHKDGWAKTHYE 126 +AR RD+ + L+A+G DPS RK KLA + FE +AREW W T+ Sbjct: 62 AQARTARDDARRLIAAGTDPSQARKEAKLATTTARTHTFEVVAREWHEKQSATWVPTYAT 121 Query: 127 KIVGRFENDVFPYLGRKPIAAITAPDLLSVIRKIESRGVLETAHRALANCGQVFRYAVAT 186 K++ E D+FP LG +PI ITAP +L+ +RK+ESR LET R C VFRYAV T Sbjct: 122 KVLHSLETDIFPDLGARPITEITAPQMLATLRKVESRDALETVARLQQRCSAVFRYAVVT 181 Query: 187 GRTERDPTGDLRGALPSVKSRRTHFAAITDPKEVGRLLRALNGYDGSPTVCAALRLAPLV 246 GR +P DL+GA + K + H A + EV L++ + GYDG AL+ L Sbjct: 182 GRAAHNPCTDLKGAFKTAKVQ--HMARV-QANEVPTLIKNIRGYDGDLITRIALQFMALT 238 Query: 247 FVRPGELRAAEWAHIDLDAAEWRYTVTKTNTQ--HIVPLSTQAVEILKELQPLTGNGQYI 304 FVR EL A+W+ ID + EWR + + H VPLS QA+ +L+ + +TGN QY+ Sbjct: 239 FVRTKELIGAQWSEIDFETEEWRIPAERMKMREPHFVPLSWQAIALLRAAEKMTGNRQYV 298 Query: 305 FPSPRSKSRPMSDNAILSAMRRMDISKDVMSGHGFRAMARTILDEVLRERVDLIEHQLAH 364 F SP+ ++ +S+N IL A+ R+ M+GHGFR +A T+L E D+IE QLAH Sbjct: 299 FQSPKGRTH-ISNNTILYALYRLGYHSR-MTGHGFRGLASTMLHEQ-GFNPDVIERQLAH 355 Query: 365 AVRDPNGRAYNRTSHLPERKRMMQRWADYLDSLGN 399 A R+ AYN +LPER+RMMQ WAD+LD L Sbjct: 356 AERNKVRAAYNHAQYLPERRRMMQHWADHLDQLAQ 390 >mll6432 [L] COG0582 Integrase Mlo Mesorhizobium loti Length = 441 Score = 328 bits (840), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 186/395 (47%), Positives = 243/395 (61%), Gaps = 14/395 (3%) Query: 8 LKDLQLKNAKPKDKPYKLSDGGGLYLLVAPTGGKGWRLKYLFQGKEKLLSLGTYPEIGLQ 67 L D++ +NA+P K KLSDGGGL L V PTG + WRL Y F GK+KLL+LG+YP I L Sbjct: 8 LSDVKCRNARPASKLVKLSDGGGLQLWVQPTGSRLWRLAYRFGGKQKLLALGSYPLISLA 67 Query: 68 EARKRRDNNKELLASGIDPSDNRKALKLAGAERAANNFEAIAREWLST-HKDGWAKTHYE 126 EAR+ RD K LL GIDP+ RK+ K + A + F +IA +++ K+G A Sbjct: 68 EAREARDTAKRLLLRGIDPAQERKSQKAS----AEDTFRSIAEDYVDKLKKEGRADRTIT 123 Query: 127 KIVGRFENDVFPYLGRKPIAAITAPDLLSVIRKIESRGVLETAHRALANCGQVFRYAVAT 186 K V + +P G K + I +L+ +R +E RG E+A R + G VFRYA+AT Sbjct: 124 K-VKWLLDFAYPTFGDKSVREIDPATILAALRSVEVRGRYESARRMRSTIGSVFRYAIAT 182 Query: 187 GRTERDPTGDLRGAL--PSVKSRRTHFAAITDPKEVGRLLRALNGYDGSPTVCAALRLAP 244 R + DPT LRGAL P+V R AA+TDPK +G LLRA+N +DG PT AAL+L Sbjct: 183 ARADVDPTIALRGALVGPTVTPR----AAVTDPKALGGLLRAINAFDGQPTTRAALKLMA 238 Query: 245 LVFVRPGELRAAEWAHIDLDAAEWRYTVTKTNTQ--HIVPLSTQAVEILKELQPLTGNGQ 302 L+F RPGELRAA W D +++ W + + H VPLSTQAV +L L+ ++G G Sbjct: 239 LLFPRPGELRAAGWDEFDFESSVWSIPEGRMKMRRPHRVPLSTQAVSVLTSLREISGGGS 298 Query: 303 YIFPSPRSKSRPMSDNAILSAMRRMDISKDVMSGHGFRAMARTILDEVLRERVDLIEHQL 362 +FPS RS SRP+SDN + +A+RRM K+ + HGFRA A T+L+E + D +E QL Sbjct: 299 LLFPSVRSGSRPISDNTLNAALRRMGYGKEEATAHGFRATASTLLNECGKWHPDAVERQL 358 Query: 363 AHAVRDPNGRAYNRTSHLPERKRMMQRWADYLDSL 397 AH + RAY R H ER RMMQ WADYLD L Sbjct: 359 AHIENNDVRRAYARAEHWEERVRMMQWWADYLDEL 393 >YPO0887 [L] COG0582 Integrase Ype Yersinia pestis Length = 404 Score = 320 bits (820), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 173/398 (43%), Positives = 237/398 (59%), Gaps = 7/398 (1%) Query: 12 QLKNAKPKDKPYKLSDGGGLYLLVAPTGGKGWRLKYLFQGKEKLLSLGTYPEIGLQEARK 71 Q++ AKPKDK YKL+DGGGLYLLV G + WRLKY F GKEKLL+LG YP++ L AR Sbjct: 7 QVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDVSLAVARV 66 Query: 72 RRDNNKELLASGIDPSDNRKALKLAGAERAANNFEAIAREWLSTHKDGWAKTHYEKIVGR 131 +RD K+++A G DPS N++ KLA A N FEAI REW D W++++ +++ Sbjct: 67 KRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYRLEMMST 126 Query: 132 FENDVFPYLGRKPIAAITAPDLLSVIRKIESRGVLETAHRALANCGQVFRYAVATGRTER 191 FE+DVFPY+G +PI I +L++V+ K+E RG E + CG+V++YA+ TGR E Sbjct: 127 FESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAIITGRAEY 186 Query: 192 DPTGDLRGALPSVKSRRTHFAAITDPKEVGRLLRALNGYDGSPTVCAALRLAPLVFVRPG 251 +P DL A K R H+ +T E+ L +L Y GS V A+RL L RPG Sbjct: 187 NPAPDLASAFAPHK--REHYPHLT-INEIPEFLSSLASYSGSMLVKLAMRLLILTGTRPG 243 Query: 252 ELRAAEWAHIDLDAAEWRYTVTKTNTQ--HIVPLSTQAVEILKELQPLTGNGQYIFPSPR 309 ELR AEWA D D A W + + H+VPL QA+ ILK++QP++G Q++FP Sbjct: 244 ELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPISGRYQFVFPGRI 303 Query: 310 SKSRPMSDNAILSAMRRMDISKDVMSGHGFRAMARTILDEVLRERVDLIEHQLAHAVRDP 369 S+P+S+ + +RR+ +GHGFR TIL E IE QLAH ++ Sbjct: 304 QHSKPISEMTLNVLIRRIGYGGRA-TGHGFRHTMSTILHEQ-GFNTAWIETQLAHVDKNS 361 Query: 370 NGRAYNRTSHLPERKRMMQRWADYLDSLGNGAEVVQLR 407 YN +L R+ M+Q +ADY+DSL NG V+ R Sbjct: 362 IRGTYNHAQYLDGRREMLQWYADYMDSLENGENVIHGR 399 >ECs0289 [L] COG0582 Integrase Ecs Escherichia coli O157:H7 Length = 393 Score = 303 bits (776), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 167/390 (42%), Positives = 227/390 (58%), Gaps = 7/390 (1%) Query: 7 PLKDLQLKNAKPKDKPYKLSDGGGLYLLVAPTGGKGWRLKYLFQGKEKLLSLGTYPEIGL 66 PL D+Q++ AKP+ K Y DG GL LL+ P G K WR +Y + GK K++SLG YP I L Sbjct: 2 PLNDMQIRRAKPEAKAYTFGDGLGLSLLIEPNGSKSWRFRYRYAGKPKMISLGVYPTITL 61 Query: 67 QEARKRRDNNKELLASGIDPSDNRKALKLAGAERAANNFEAIAREWLSTHKDGWAKTHYE 126 +AR RRD ++L+A G +PS+ RK KLA + N FE IAREW W+ + Sbjct: 62 ADARSRRDEARKLVAEGKNPSEVRKEQKLAMQTESENAFEKIAREWHQLKSAKWSAGYAS 121 Query: 127 KIVGRFENDVFPYLGRKPIAAITAPDLLSVIRKIESRGVLETAHRALANCGQVFRYAVAT 186 I+ F+ND+FPY+G +P+ I +LL+V+RKIE RG LE + C +VFRYA+AT Sbjct: 122 DIMEAFKNDIFPYVGTRPVGEIKPLELLNVLRKIEKRGALEKMRKVRQRCSEVFRYAIAT 181 Query: 187 GRTERDPTGDLRGALPSVKSRRTHFAAITDPKEVGRLLRALNGYDGSPTVCAALRLAPLV 246 GR E +P DL AL +S HF + E+ LRAL GY GS V A +L + Sbjct: 182 GRAEYNPAADLSSALEVHQS--NHFPFL-KADEIPDFLRALEGYSGSKLVQIATKLLMIT 238 Query: 247 FVRPGELRAAEWAHIDLDAAEWRYTVTKTNTQ--HIVPLSTQAVEILKELQPLTGNGQYI 304 VR ELRAA W DLD A W + + H+VPLS+QAV++L EL+ +TGN +Y+ Sbjct: 239 GVRTIELRAALWQEFDLDNAIWEIPAERMKMRRPHLVPLSSQAVDLLNELKIMTGNYRYV 298 Query: 305 FPSPRSKSRPMSDNAILSAMRRMDISKDVMSGHGFRAMARTILDEVLRERVDLIEHQLAH 364 FP +RPMS+ +I A++R+ V +GHGFR TIL E E IE QLAH Sbjct: 299 FPGRNDPNRPMSEASINQAIKRIGYGGKV-TGHGFRHTLSTILHEQGFESA-WIEIQLAH 356 Query: 365 AVRDPNGRAYNRTSHLPERKRMMQRWADYL 394 ++ YN + RK MM +++ + Sbjct: 357 VDKNSIRGTYNHAQYFSGRKSMMDWYSNLI 386