BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0012.p         (137 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2564 [J] COG0324 tRNA delta(2)-isopentenylpyrophosphate trans...   155   2e-38
PM0905 [J] COG0324 tRNA delta(2)-isopentenylpyrophosphate transf...   134   6e-32
HI0068 [J] COG0324 tRNA delta(2)-isopentenylpyrophosphate transf...   129   2e-30
PA4945 [J] COG0324 tRNA delta(2)-isopentenylpyrophosphate transf...   128   3e-30
VC0346 [J] COG0324 tRNA delta(2)-isopentenylpyrophosphate transf...   117   6e-27

>RSc2564 [J] COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase Rso
           Ralstonia solanacearum
          Length = 323

 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/141 (62%), Positives = 98/141 (69%), Gaps = 7/141 (4%)

Query: 1   MSALLTQKTAAAL------PFTLLPLALEPSDRAVLHERIARRFDLMLENDGLLDEVCRL 54
           MSALL ++  AA           L +ALEP+DRAVLH RIA+RFD ML   GLLDEV  L
Sbjct: 181 MSALLAREAGAAAFHRHEAAAAYLSIALEPADRAVLHARIAQRFDAMLAG-GLLDEVEAL 239

Query: 55  RARGDLHLGLPSMRCVGYRQAWEYLDGQYDHAEMRERGIIATRQLAKRQITWLRSTPERI 114
           R RGDL   LPS+RCVGYRQAW YLDG+ D A +RE+GI ATRQL KRQITWLRSTPER 
Sbjct: 240 RRRGDLSPVLPSIRCVGYRQAWAYLDGEIDMATLREQGIAATRQLCKRQITWLRSTPERR 299

Query: 115 VIDCNAADATQAVMAHVRKAL 135
           V+DC A D    V   VR AL
Sbjct: 300 VVDCLAPDYVDQVARLVRNAL 320


>PM0905 [J] COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase Pmu
           Pasteurella multocida
          Length = 357

 Score =  134 bits (337), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 69/134 (51%), Positives = 87/134 (64%), Gaps = 2/134 (1%)

Query: 5   LTQKTAAALPFTLLPLALEPSDRAVLHERIARRFDLMLENDGLLDEVCRLRARGDLHLGL 64
           L+Q+   +LP+ +L  A+ P DR++LH+RIA RF  M+E  G   EV +L  R DLHL L
Sbjct: 222 LSQQKGDSLPYQILQFAIAPKDRSILHDRIALRFQKMIEQ-GFQQEVEKLYQREDLHLDL 280

Query: 65  PSMRCVGYRQAWEYLDGQYDHAEMRERGIIATRQLAKRQITWLRSTPERIV-IDCNAADA 123
           P+MRCVGYRQ WEYL G YDH EM  RGI ATRQLAKRQITWLR     I  +D  A ++
Sbjct: 281 PAMRCVGYRQMWEYLRGDYDHDEMIFRGICATRQLAKRQITWLRGWKYPIEWLDSLAIES 340

Query: 124 TQAVMAHVRKALGH 137
            +  + H    + H
Sbjct: 341 AKQTIIHAVTKISH 354


>HI0068 [J] COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase Hin
           Haemophilus influenzae
          Length = 311

 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/129 (51%), Positives = 85/129 (65%), Gaps = 3/129 (2%)

Query: 5   LTQKTAAALPFTLLPLALEPSDRAVLHERIARRFDLMLENDGLLDEVCRLRARGDLHLGL 64
           LT++   ALP+  +  A+ P DR VLHERI +RF  M+E  G   EV +L ARGDL++ L
Sbjct: 178 LTEEKGEALPYDFVQFAIAPQDRHVLHERIEQRFHKMIEL-GFQAEVEKLYARGDLNINL 236

Query: 65  PSMRCVGYRQAWEYLDGQYDHAEMRERGIIATRQLAKRQITWLRS--TPERIVIDCNAAD 122
           PS+RCVGYRQ WEYL G Y + EM  RGI ATRQLAKRQ+TWLR   TP + +       
Sbjct: 237 PSIRCVGYRQMWEYLQGDYAYEEMIFRGICATRQLAKRQLTWLRGWKTPIQWLDSLQPQQ 296

Query: 123 ATQAVMAHV 131
           A + V+ H+
Sbjct: 297 AKETVLRHL 305


>PA4945 [J] COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase Pae
           Pseudomonas aeruginosa
          Length = 323

 Score =  128 bits (322), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/110 (60%), Positives = 77/110 (70%), Gaps = 1/110 (0%)

Query: 13  LPFTLLPLALEPSDRAVLHERIARRFDLMLENDGLLDEVCRLRARGDLHLGLPSMRCVGY 72
           LP+T+  LA+ P  R VLH RIA+RF  MLE  G + EV  L AR DLH GLPS+R VGY
Sbjct: 199 LPYTVAQLAIAPEQRQVLHARIAQRFRQMLEQ-GFIAEVEALHARSDLHAGLPSIRAVGY 257

Query: 73  RQAWEYLDGQYDHAEMRERGIIATRQLAKRQITWLRSTPERIVIDCNAAD 122
           RQ W+YLDG+  +AEM ERGIIATRQLAKRQ TWLRS      +D  A D
Sbjct: 258 RQVWDYLDGKLSYAEMTERGIIATRQLAKRQFTWLRSWSHLHWMDSLAGD 307


>VC0346 [J] COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase Vch
           Vibrio cholerae
          Length = 315

 Score =  117 bits (294), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 79/123 (64%), Gaps = 3/123 (2%)

Query: 5   LTQKTAAALPFTLLPLALEPSDRAVLHERIARRFDLMLENDGLLDEVCRLRARGDLHLGL 64
           LTQ    A+P+ +L  A+ P +RA LH RI  RF+ M+E+ G  +EV  L AR DLH  L
Sbjct: 181 LTQTKGEAIPYRVLQFAIAPKERAELHRRIELRFEKMVES-GFEEEVKALYARDDLHPDL 239

Query: 65  PSMRCVGYRQAWEYLDGQYDHAEMRERGIIATRQLAKRQITWLRSTPERIVIDCNAADAT 124
           PS+RCVGYRQ W+YLDG     E   RGI ATRQLAKRQITWLRS  +   +D    D  
Sbjct: 240 PSIRCVGYRQMWDYLDGHGTLDEAIYRGICATRQLAKRQITWLRSWDDLTWLDSENVD-- 297

Query: 125 QAV 127
           QAV
Sbjct: 298 QAV 300