BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0008.p (723 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3136 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 586 e-167 RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 367 e-101 RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 359 2e-98 YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 336 1e-91 RSc0606 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 333 9e-91 >RSc3136 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 661 Score = 586 bits (1510), Expect = e-167, Method: Compositional matrix adjust. Identities = 322/666 (48%), Positives = 466/666 (69%), Gaps = 12/666 (1%) Query: 1 MQTSAFHY---RSWAVGTKLTSLTLALVGTLFVAAILLIDLTTSAMLEQRSMNQISGETR 57 M+TSA + + ++G++L LA + +F A L I ++ LE + + + + Sbjct: 1 MRTSAPQHAPQSATSLGSRLAVAGLAALVLVFGAFALAISQSSLRTLEDHAQSAMRDQEA 60 Query: 58 AVVNMVEMFDRSVNSQVERFSNMFSNAFPGKFTLDASRTVQIGDKATPVLRNGDTDLNLD 117 A+ +M+ +FD ++ ++ +RF F++A PG +++D ++TV + K TP R+GDT +NLD Sbjct: 61 AMRDMIALFDGTMRTEADRFLTAFADAAPGPYSVDPAQTVAVAGKPTPTFRSGDTAMNLD 120 Query: 118 FSIPDRFTAQTGVT-ATIFAKSGDDFVRVSTSVKKEDGERAVGTMLDRAHPGYAALKADK 176 F+IPD+F A+TG T AT+FA++GDDFVRV+TS+KKE+GERA+GT+LDRAHP Y AL A + Sbjct: 121 FAIPDKFFARTGGTIATVFARTGDDFVRVTTSLKKENGERAIGTLLDRAHPSYRALMAGE 180 Query: 177 SYSGIATLFGKQYITKYVPIKDAAGQLIGVLYVGVDISDDIKALKDKIKALKIGETGFFY 236 S+ G+A LFG Y++KY P++DAAG+++G LYVGVD+ ++ LKDKI++ IG+TG ++ Sbjct: 181 SFRGLAWLFGVPYMSKYEPVRDAAGKVVGALYVGVDVRAELALLKDKIRSHGIGKTGGYF 240 Query: 237 VLNAKEGKDFGTLL--AGPKDEGKNLLGLKDVDGKEFIKDMLAKKQGVMRYMWDNPDTAG 294 V++ K G D G +L P EGKNLL KD DG ++++M+ ++ G++R+ DT G Sbjct: 241 VIDGKAGADQGKVLIDRDPGREGKNLLDAKDADGLAWVREMIERRDGILRHTL--ADTEG 298 Query: 295 HSGEEKIVAFSQFPAWNWVIVGETYTNEVTREIAAMRNRFMLFGAAFLLLVGVVLTMVIK 354 + F+Q+P W VI G Y +E+ ++ + RNRF+L G A L+ L +++ Sbjct: 299 GPARARFTVFTQYPDWKLVIAGTAYVDELEADLVSARNRFLLLGLALGALLAGGLYWMLR 358 Query: 355 RVVTRPLARAREXAAADMLASGDLTARVRVSDGQQDEIGQLMRAVNGISEGLAHVVADVR 414 R V+ PLA A +A+GDLT R S ++DEIGQLM A+NG+ +GL+ +V VR Sbjct: 359 RAVSAPLAEV--AGVARRVAAGDLTHRF--SGTRRDEIGQLMHAINGLGDGLSGIVDKVR 414 Query: 415 QGTEQITTASSEIATGNLDLSSRTEQQAGSLEETASAMEELTSTVKQNADNAGQANQLAL 474 I +++ +IA GN+DLS+RTE QAG+LE TAS++E+L +TV+QNAD+A A+ + Sbjct: 415 ASASTIASSTGQIAAGNVDLSARTEAQAGNLERTASSIEQLAATVRQNADSAQHAHDMVQ 474 Query: 475 SASEVASQGGAVVGKVIDTMGSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGE 534 SASE A+ GG V +++ TM I+ +++KI DI +IDGIAFQTNILALNAAVEAARAGE Sbjct: 475 SASEAANAGGRTVARLVGTMSGIHTTAQKIADITGIIDGIAFQTNILALNAAVEAARAGE 534 Query: 535 QGRGFAVVASEVRSLAQRSAAAAKEIKGLIDDSVEKVEAGSKLVEQAGATMGEVVASVKR 594 QGRGFAVVA EVRSLAQRSAAAAKEIK LI SV++V+AG++ AG M ++V V+R Sbjct: 535 QGRGFAVVAGEVRSLAQRSAAAAKEIKELISRSVQEVQAGNEAARGAGEAMQDIVTRVER 594 Query: 595 VTDIVGEISSASQEQRAGIEQVNHAIVQMEQTTQQNAALVEQAAAAAQSLQDQAHKLTAS 654 + I+GEIS AS+EQ GIE+VN A+ M++ TQQNAALVE+AAAAA+SL+ QA +L + Sbjct: 595 IAGIMGEISHASREQSQGIEEVNRAVTSMDEVTQQNAALVEEAAAAAESLRQQAQELRGA 654 Query: 655 VSTFKL 660 V F+L Sbjct: 655 VDVFRL 660 >RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 629 Score = 367 bits (941), Expect = e-101, Method: Compositional matrix adjust. Identities = 266/562 (47%), Positives = 335/562 (59%), Gaps = 76/562 (13%) Query: 222 DKIKALKIGETGFFYVLNAKEGKDFGTLLAGPKDE--GKNLLGLKDVDGKE-FIKDMLAK 278 D+ ++L+ + G+F + + D ++ K E GK+ G KD G ++ A Sbjct: 84 DRFRSLRYDKDGYFTITRS----DNVVVMHPIKPEFIGKDQTGFKDAQGNSVYVNLTSAA 139 Query: 279 KQ---GVMRYMWDNPDTAGHSGEEKIVAFSQFPAWNWVIVGETYTNEVTREIAAMRNRFM 335 +Q G Y+W P G + K ++ W+WV Y +++ FM Sbjct: 140 RQPNGGFTSYVW--PHVGGTALVPKTAFAQRYEPWDWVFSTGAYMDDINAA-------FM 190 Query: 336 --LFGAAFLLLVGVVLTMVIKRVVTRPLARA------REXAAADMLASGDLTARVRVSDG 387 L+ + LLL+ + +++ V R L RA A+ +A GDL+ + Sbjct: 191 TSLYESGGLLLLAGAVLVLLAGVANRGLQRALGGDPAYAAEVANRIAGGDLSVEIAT--- 247 Query: 388 QQDEIGQLMRAVNGISEGLAHVVADVRQGTEQITTASSEIATGNLDLSSRTEQQAGSLEE 447 + D+ L+ A+ + L + +R +E I TA+ EIA+GNLDLSSRTEQQA SLEE Sbjct: 248 RPDDRDSLLYAMGRMRGALVQTIGRIRGASETIGTATREIASGNLDLSSRTEQQASSLEE 307 Query: 448 TASAMEELTSTVKQNADNAGQANQLALSASEVASQGGAVVGKVIDTMGSINESSRKIVDI 507 TASAMEEL STV+QNADNA QANQLA+SAS+VA +GG VV +V++TMGSIN SSRKIVDI Sbjct: 308 TASAMEELMSTVQQNADNANQANQLAVSASDVAVRGGDVVSRVVETMGSINASSRKIVDI 367 Query: 508 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKGLIDDS 567 I VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSAAAAKEIK LIDDS Sbjct: 368 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIDDS 427 Query: 568 VEKVEAGSKLVEQAGATMGEVVASVKRVTDIVGEISSASQEQRAGIEQVNHAIVQMEQTT 627 V V+AGS LVE+AG TM E+VASV+RVTDIVGEI++ASQEQR+GIE+V+HA+ Q++ T Sbjct: 428 VTNVDAGSALVEEAGTTMREIVASVRRVTDIVGEITAASQEQRSGIEEVSHAVTQLDDAT 487 Query: 628 QQNAALVEQAAAAAQSLQDQAHKLTASVSTFKLDET--------------------HAME 667 QQNAALVEQAAAAAQSLQ+QA LT V+ F+LD T A E Sbjct: 488 QQNAALVEQAAAAAQSLQEQADSLTQVVAQFRLDPTMSAVRSVVAKAEPTIAPPVPKAAE 547 Query: 668 FGAAGTGTAA-------------PVR--------KLVARTSP-----APKPAAAPKAAPV 701 G A A PV+ KL R +P A +P AP P Sbjct: 548 AGPATPVPVAAPVAAPAQAPRREPVKPSPEAARPKLQPRKAPVLAKRAARPDTAPATVPA 607 Query: 702 AKLPPSGKSLPAPSKDDDWEQF 723 A P + L A D DWE F Sbjct: 608 ASPKPLHQPLVAAGDDADWETF 629 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 359 bits (921), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 201/326 (61%), Positives = 250/326 (76%), Gaps = 4/326 (1%) Query: 335 MLFGAAFLLLVGVVLTMVIKRVVTRPLARAREXAAADMLASGDLTARVRVSDGQQDEIGQ 394 M+ A L+ + I R +TRP+ A A A +A G+LT + V QDEIG+ Sbjct: 192 MIVLAVLATLLAIATGAFITRTITRPINHAMHLAEA--VAQGNLTHLLEVDT--QDEIGR 247 Query: 395 LMRAVNGISEGLAHVVADVRQGTEQITTASSEIATGNLDLSSRTEQQAGSLEETASAMEE 454 L+ A+ + E L +V+ VR GT+ IT ASSE+A+GN+DLSSRTEQQA SLEETA+AME+ Sbjct: 248 LLAALKHMIENLHGIVSQVRGGTDTITRASSEVASGNIDLSSRTEQQASSLEETAAAMEQ 307 Query: 455 LTSTVKQNADNAGQANQLALSASEVASQGGAVVGKVIDTMGSINESSRKIVDIISVIDGI 514 LTSTVKQNADNA +A++LA +AS VA++GG V + I TM +IN SSRKIVDII VIDGI Sbjct: 308 LTSTVKQNADNAQEASRLASNASMVATKGGDAVDEAIQTMSTINTSSRKIVDIIGVIDGI 367 Query: 515 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKGLIDDSVEKVEAG 574 AFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSAAAAKEIK LI+DSV V G Sbjct: 368 AFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIEDSVGHVSTG 427 Query: 575 SKLVEQAGATMGEVVASVKRVTDIVGEISSASQEQRAGIEQVNHAIVQMEQTTQQNAALV 634 + VE+AG + +VVA ++ VT+IV EIS++S+EQ GIEQ+N AI QM++ TQ+NA+LV Sbjct: 428 TAKVEEAGQIIRDVVAGIQNVTNIVSEISASSREQSDGIEQINEAITQMDKATQENASLV 487 Query: 635 EQAAAAAQSLQDQAHKLTASVSTFKL 660 E++A AAQ+LQDQA++L VSTFKL Sbjct: 488 EESATAAQALQDQANQLADMVSTFKL 513 >YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 557 Score = 336 bits (862), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 193/371 (52%), Positives = 253/371 (68%), Gaps = 27/371 (7%) Query: 353 IKRVVTRPLARAREXAAADMLASGDLTARVRVSDGQQDEIGQLMRAVNGISEGLAHVVAD 412 +++++ PL A +A+GDLT + V ++E+G L ++ + L +V + Sbjct: 214 MQQILIHPLNHL--IAHIKHIANGDLTQNIEVHG--RNEVGTLAASLKHMQSELVTIVGE 269 Query: 413 VRQGTEQITTASSEIATGNLDLSSRTEQQAGSLEETASAMEELTSTVKQNADNAGQANQL 472 VR G + I + +SEIA GN DLS+RTEQQA SLEETA++ME+LT+TVKQNA+NA QA+QL Sbjct: 270 VRVGADAIYSGASEIAVGNNDLSARTEQQAASLEETAASMEQLTATVKQNAENARQASQL 329 Query: 473 ALSASEVASQGGAVVGKVIDTMGSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARA 532 ALSASE A +GG VV V+ TM I SS+KI DI SVIDGIAFQTNILALNAAVEAARA Sbjct: 330 ALSASETAQKGGKVVADVVQTMHEIAGSSQKIADITSVIDGIAFQTNILALNAAVEAARA 389 Query: 533 GEQGRGFAVVASEVRSLAQRSAAAAKEIKGLIDDSVEKVEAGSKLVEQAGATMGEVVASV 592 GEQGRGFAVVA EVR+LAQRSA AAKEIKGLIDDSV +V+ GS LVE AG TMG++V +V Sbjct: 390 GEQGRGFAVVAGEVRNLAQRSAQAAKEIKGLIDDSVNRVDLGSVLVESAGETMGDIVNAV 449 Query: 593 KRVTDIVGEISSASQEQRAGIEQVNHAIVQMEQTTQQNAALVEQAAAAAQSLQDQAHKLT 652 RVTDI+GEI+SAS EQ GI+Q+ A+ +M++ TQQNA+LVE++A+AA SL++QA LT Sbjct: 450 TRVTDIMGEIASASDEQSRGIDQIGQAVAEMDRVTQQNASLVEESASAAASLEEQASMLT 509 Query: 653 ASVSTFKLDETHAMEFGAAGTGTAAPVRKLVARTSPAPKPAAAPKAAPVAKLPPSGKSLP 712 ++S F L + + + VRK+ P ++ + K Sbjct: 510 QAMSVFVL--------SVDNSNSTSDVRKV---------------KQPTQEMNSTAKKAL 546 Query: 713 APSKDDDWEQF 723 + D+WE F Sbjct: 547 GNNLQDNWETF 557 >RSc0606 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 617 Score = 333 bits (854), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 193/286 (67%), Positives = 238/286 (83%), Gaps = 2/286 (0%) Query: 375 SGDLTARVRVSDGQQDEIGQLMRAVNGISEGLAHVVADVRQGTEQITTASSEIATGNLDL 434 SGDLT R+ +DGQ DE+ Q+ R+ N ++ L V+ +R G++ + +A+ EIA GN DL Sbjct: 332 SGDLTKRLP-ADGQ-DEVAQIARSFNAFADKLTAVLQQIRLGSDSVRSAAQEIAAGNADL 389 Query: 435 SSRTEQQAGSLEETASAMEELTSTVKQNADNAGQANQLALSASEVASQGGAVVGKVIDTM 494 S RTE+QA SLEETAS+MEELTS VKQNADNA QA+ LA++AS+VA++GG+VVG+V+ TM Sbjct: 390 SQRTEEQASSLEETASSMEELTSIVKQNADNARQASSLAVNASDVATRGGSVVGQVVQTM 449 Query: 495 GSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA 554 G INESS+KI DII VI+ IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA Sbjct: 450 GGINESSKKIADIIGVIESIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA 509 Query: 555 AAAKEIKGLIDDSVEKVEAGSKLVEQAGATMGEVVASVKRVTDIVGEISSASQEQRAGIE 614 AAKEIK LI DSV++V G+ LV+QAG TM E+V +VKRVTDI+GEIS+AS+EQ +GIE Sbjct: 510 GAAKEIKALIHDSVDRVSNGTALVDQAGVTMAEIVEAVKRVTDIMGEISAASEEQSSGIE 569 Query: 615 QVNHAIVQMEQTTQQNAALVEQAAAAAQSLQDQAHKLTASVSTFKL 660 QVN A+ QM+Q TQQNAALVEQAAAAA+SL++QA L +V +F+L Sbjct: 570 QVNQAVNQMDQVTQQNAALVEQAAAAAESLEEQARNLNDAVGSFRL 615