BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0007.p (1000 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1545 [T] COG5001 Predicted signal transduction protein contai... 276 2e-73 Z2221m_3 [T] COG2200 FOG EcZ Escherichia coli O157:H7 EDL933 244 1e-63 ECs2093_2 [T] COG2200 FOG Ecs Escherichia coli O157:H7 244 1e-63 yddU_3 [T] COG2200 FOG Eco Escherichia coli K12 238 4e-62 PA1423_1 [T] COG2202 FOG Pae Pseudomonas aeruginosa 231 7e-60 >RSc1545 [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Rso Ralstonia solanacearum Length = 776 Score = 276 bits (705), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 167/431 (38%), Positives = 238/431 (55%), Gaps = 10/431 (2%) Query: 554 ALALEREEARSRIHRLAFYDSLTGLPNRSLLLVSANQAIANAARTQIPLAVLFIDLDRFK 613 AL + EA +RI +LA YD+LTGL NR+ Q A A + L +L+IDLD FK Sbjct: 326 ALVTKEVEAENRIRQLAHYDTLTGLANRTNF---REQLDARLAAPEARLGLLYIDLDGFK 382 Query: 614 QINDSLGHQAGDELLCTVASRLQTEA-RKSDIVGRLSGDEFVIVLAQCDLNRVTDVVKRI 672 +ND+ GH+AGD LL VA RL+ R + RL GDEF +++ D +R + + Sbjct: 383 LVNDTKGHRAGDALLERVAQRLRAVCDRPGMAIARLGGDEFAVLVPHDDADRAATLATAL 442 Query: 673 QTSLSMPCHI-AGVTLTPSASIGISLFPDNGETIEILLHRADMAMYQTKANNRDRFSFFS 731 +L P + A + ASIGI+L P +G E LL RAD+A+Y KA + F Sbjct: 443 IEALGAPYALGADQNVRIGASIGIALAPAHGRDTENLLARADIALYAAKAAGKGLARLFC 502 Query: 732 DEMNTQAQERLALEGALRDALRGGD-FELHYQPQINFHTGLLHGVEALARWHHDQLGQIS 790 +M T+ Q R LE LR AL D + YQP ++ TG + EAL RWHH + G + Sbjct: 503 ADMETRIQARALLEAQLRAALEHQDRLFVFYQPIVDVATGKVTAREALVRWHHAERGWVP 562 Query: 791 PARFIPIAEECGLIGELGKWALEEACFQLHDWRRRGINVPSVSVNLSSTNFHDLELPQFI 850 P F+PIAE+ GLI +LG++ L AC + W + V+VN+S L Q + Sbjct: 563 PDEFVPIAEQSGLIDQLGRFVLHRACREATRWE----DGARVAVNVSPMQLGKATLAQTV 618 Query: 851 AGLLQRFALAPGDLTLEITETVMMDTNPSTTRTIREVHAQGVKLAMDDFGTGYSSLGYLR 910 L LAP L +E+TET ++ + +R+++ GV++A+DDFGTGYSSL +LR Sbjct: 619 HAALIDSGLAPDRLEIEVTETALIQNEAESFEDLRQLYDMGVRVALDDFGTGYSSLAHLR 678 Query: 911 NLPVCELKLDQSFVRDMDRDQTVLALTNAVIRIGESLDLIVVAEGVEDKRQYDLLKQQGC 970 P ++K+D+SFVRD+ L A+ +G L + VAEGVE + +++ GC Sbjct: 679 AFPFDKIKIDRSFVRDLLERPDSAVLVRAIADLGRQLGVTTVAEGVETQAHVRGIREAGC 738 Query: 971 DVAQGYLFSRP 981 AQGY + RP Sbjct: 739 TEAQGYYYGRP 749 >Z2221m_3 [T] COG2200 FOG EcZ Escherichia coli O157:H7 EDL933 Length = 267 Score = 244 bits (622), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 118/260 (45%), Positives = 174/260 (66%) Query: 734 MNTQAQERLALEGALRDALRGGDFELHYQPQINFHTGLLHGVEALARWHHDQLGQISPAR 793 MN +ERL L AL++A+ +L YQPQI TG L+G+EALARWH Q G + P+R Sbjct: 2 MNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGELYGIEALARWHDPQHGHVPPSR 61 Query: 794 FIPIAEECGLIGELGKWALEEACFQLHDWRRRGINVPSVSVNLSSTNFHDLELPQFIAGL 853 FIP+AEE G I +G+W + EAC QL +WR + I++P++SVNLS+ +F +LP ++ Sbjct: 62 FIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPALSVNLSALHFRSNQLPNQVSDA 121 Query: 854 LQRFALAPGDLTLEITETVMMDTNPSTTRTIREVHAQGVKLAMDDFGTGYSSLGYLRNLP 913 +Q + + LT+EITE++MM+ + + I+ + GV L++DDFGTG+S L L +LP Sbjct: 122 MQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMGVGLSVDDFGTGFSGLSRLVSLP 181 Query: 914 VCELKLDQSFVRDMDRDQTVLALTNAVIRIGESLDLIVVAEGVEDKRQYDLLKQQGCDVA 973 V E+K+D+SFV ++ +LAL A+ IG+SL+L VVAEGVE K Q+++L++ C V Sbjct: 182 VTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVAEGVETKEQFEMLRKIHCRVI 241 Query: 974 QGYLFSRPMLATVFEHWLKN 993 QGY FSRP+ A W+ + Sbjct: 242 QGYFFSRPLPAEEIPGWMSS 261 >ECs2093_2 [T] COG2200 FOG Ecs Escherichia coli O157:H7 Length = 268 Score = 244 bits (622), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 118/260 (45%), Positives = 174/260 (66%) Query: 734 MNTQAQERLALEGALRDALRGGDFELHYQPQINFHTGLLHGVEALARWHHDQLGQISPAR 793 MN +ERL L AL++A+ +L YQPQI TG L+G+EALARWH Q G + P+R Sbjct: 3 MNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGELYGIEALARWHDPQHGHVPPSR 62 Query: 794 FIPIAEECGLIGELGKWALEEACFQLHDWRRRGINVPSVSVNLSSTNFHDLELPQFIAGL 853 FIP+AEE G I +G+W + EAC QL +WR + I++P++SVNLS+ +F +LP ++ Sbjct: 63 FIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPALSVNLSALHFRSNQLPNQVSDA 122 Query: 854 LQRFALAPGDLTLEITETVMMDTNPSTTRTIREVHAQGVKLAMDDFGTGYSSLGYLRNLP 913 +Q + + LT+EITE++MM+ + + I+ + GV L++DDFGTG+S L L +LP Sbjct: 123 MQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMGVGLSVDDFGTGFSGLSRLVSLP 182 Query: 914 VCELKLDQSFVRDMDRDQTVLALTNAVIRIGESLDLIVVAEGVEDKRQYDLLKQQGCDVA 973 V E+K+D+SFV ++ +LAL A+ IG+SL+L VVAEGVE K Q+++L++ C V Sbjct: 183 VTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVAEGVETKEQFEMLRKIHCRVI 242 Query: 974 QGYLFSRPMLATVFEHWLKN 993 QGY FSRP+ A W+ + Sbjct: 243 QGYFFSRPLPAEEIPGWMSS 262 >yddU_3 [T] COG2200 FOG Eco Escherichia coli K12 Length = 267 Score = 238 bits (608), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 116/260 (44%), Positives = 172/260 (66%) Query: 734 MNTQAQERLALEGALRDALRGGDFELHYQPQINFHTGLLHGVEALARWHHDQLGQISPAR 793 MN +ERL L AL++A+ +L YQPQI TG L+G+EALARWH G + P+R Sbjct: 2 MNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGELYGIEALARWHDPLHGHVPPSR 61 Query: 794 FIPIAEECGLIGELGKWALEEACFQLHDWRRRGINVPSVSVNLSSTNFHDLELPQFIAGL 853 FIP+AEE G I +G+W + EAC QL +WR + I++P++SVNLS+ +F +LP ++ Sbjct: 62 FIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPALSVNLSALHFRSNQLPNQVSDA 121 Query: 854 LQRFALAPGDLTLEITETVMMDTNPSTTRTIREVHAQGVKLAMDDFGTGYSSLGYLRNLP 913 + + + LT+EITE++MM+ + + I+ + GV L++DDFGTG+S L L +LP Sbjct: 122 MHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMGVGLSVDDFGTGFSGLSRLVSLP 181 Query: 914 VCELKLDQSFVRDMDRDQTVLALTNAVIRIGESLDLIVVAEGVEDKRQYDLLKQQGCDVA 973 V E+K+D+SFV ++ +LAL A+ IG+SL+L VVAEGVE K Q+++L++ C V Sbjct: 182 VTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVAEGVETKEQFEMLRKIHCRVI 241 Query: 974 QGYLFSRPMLATVFEHWLKN 993 QGY FSRP+ A W+ + Sbjct: 242 QGYFFSRPLPAEEIPGWMSS 261 >PA1423_1 [T] COG2202 FOG Pae Pseudomonas aeruginosa Length = 222 Score = 231 bits (589), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 107/220 (48%), Positives = 147/220 (66%) Query: 37 LAAFSRSMAILELAPDGTILSANDNFLTLMAYRHSDIVGHHHRMLCNPTHAGSPEYAEFW 96 +AA RSMA +E PDG I AN+NFLTL+ YR +I+G HR LC+ +A S +Y FW Sbjct: 1 MAALDRSMARVEFDPDGNITDANENFLTLLGYRRDEILGKPHRQLCDGAYAQSEDYRRFW 60 Query: 97 RRLHQGEVVSGTLQRMRSDGSRLWLEATCNPVFDAEGRLLRVVSIAADITAHIDDSQEKH 156 RL +GE SG +R+ +G LWLEAT NPV D +GRLL+VV A+DI A + E Sbjct: 61 ERLRRGEHFSGRCKRITREGRPLWLEATYNPVRDGQGRLLKVVKYASDIDAIVHQEHEMQ 120 Query: 157 SVLRALNRSLGVIEFSADGIIVGANGNYLKTMGYLPEEIVGKHHRFLCEPDYVDSQEYEN 216 S L AL+RS+ +IEF DG ++ AN N+L TMGY E+ +HR CEP Y D +Y + Sbjct: 121 SKLDALSRSMAMIEFDLDGNVLAANDNFLATMGYGRAELASANHRQFCEPGYRDGPQYAD 180 Query: 217 FWRDVNQGRFFSGRFKRIARDGRPVWWEATYTPVFDLEGE 256 WR +N+G + +G+F+R+ R+G+PVW EA+Y PV+D +G+ Sbjct: 181 LWRRLNRGEYVTGQFRRVHRNGQPVWLEASYNPVYDADGK 220 Score = 138 bits (347), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 116/224 (51%), Gaps = 5/224 (2%) Query: 161 ALNRSLGVIEFSADGIIVGANGNYLKTMGYLPEEIVGKHHRFLCEPDYVDSQEYENFWRD 220 AL+RS+ +EF DG I AN N+L +GY +EI+GK HR LC+ Y S++Y FW Sbjct: 3 ALDRSMARVEFDPDGNITDANENFLTLLGYRRDEILGKPHRQLCDGAYAQSEDYRRFWER 62 Query: 221 VNQGRFFSGRFKRIARDGRPVWWEATYTPVFDLEGEPIKIISIGSDVSYRMVREQRDREY 280 + +G FSGR KRI R+GRP+W EATY PV D +G +K++ SD+ + +E E Sbjct: 63 LRRGEHFSGRCKRITREGRPLWLEATYNPVRDGQGRLLKVVKYASDIDAIVHQEH---EM 119 Query: 281 QHLLSLGINETDNAVFITNDANHIVFHNTGFSRMLGFTAEEVIGRRPRELFEGQTAILKL 340 Q L ++ + + D N ++ N F +G+ E+ R+ E Sbjct: 120 QSKLD-ALSRSMAMIEFDLDGN-VLAANDNFLATMGYGRAELASANHRQFCEPGYRDGPQ 177 Query: 341 IEDCYAVIAEGRSFHGEEMMVDKQGHPLWVSTVVNPILDGDGKL 384 D + + G G+ V + G P+W+ NP+ D DGKL Sbjct: 178 YADLWRRLNRGEYVTGQFRRVHRNGQPVWLEASYNPVYDADGKL 221 Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 48/104 (46%), Positives = 72/104 (69%) Query: 32 EKEALLAAFSRSMAILELAPDGTILSANDNFLTLMAYRHSDIVGHHHRMLCNPTHAGSPE 91 E ++ L A SRSMA++E DG +L+ANDNFL M Y +++ +HR C P + P+ Sbjct: 118 EMQSKLDALSRSMAMIEFDLDGNVLAANDNFLATMGYGRAELASANHRQFCEPGYRDGPQ 177 Query: 92 YAEFWRRLHQGEVVSGTLQRMRSDGSRLWLEATCNPVFDAEGRL 135 YA+ WRRL++GE V+G +R+ +G +WLEA+ NPV+DA+G+L Sbjct: 178 YADLWRRLNRGEYVTGQFRRVHRNGQPVWLEASYNPVYDADGKL 221