BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0004.p         (162 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM4357 [R] COG0802 Predicted ATPase or kinase Sty Salmonella ty...   147   1e-35
YPO0369 [R] COG0802 Predicted ATPase or kinase Ype Yersinia pestis    142   3e-34
yjeE [R] COG0802 Predicted ATPase or kinase Eco Escherichia coli...   141   6e-34
ZyjeE [R] COG0802 Predicted ATPase or kinase EcZ Escherichia col...   141   6e-34
ECs5144 [R] COG0802 Predicted ATPase or kinase Ecs Escherichia c...   141   6e-34

>STM4357 [R] COG0802 Predicted ATPase or kinase Sty Salmonella typhimurium
           LT2
          Length = 153

 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/153 (47%), Positives = 95/153 (62%), Gaps = 4/153 (2%)

Query: 4   SRHTHLQDEAGTAALGASLAQVLEPGMAIYLHGDLGAGKTALTRALLHAAGYPGRVKSPT 63
           +R   L DE  T  LG  +A   +    IYL+GDLGAGKT  +R  L A G+ G VKSPT
Sbjct: 3   NRVIPLPDEQATLDLGQRVANACDGATVIYLYGDLGAGKTTFSRGFLQALGHNGNVKSPT 62

Query: 64  YTLAEPYEVKLADRMVTVIHFDLYRMASPEEFLDAGFREHFNENSICIIEWPEKGDPVLP 123
           YTL EPY +   D M+ V HFDLYR+A PEE    G R++F  ++IC++EWP++G  VLP
Sbjct: 63  YTLVEPYAI---DNMM-VYHFDLYRLADPEELEFMGIRDYFANDAICLVEWPQQGKGVLP 118

Query: 124 PPDINISLTVAGHGRDVELRALSDKGHQCLARL 156
            PD+ I +     GR+  + A+S  GH  LARL
Sbjct: 119 DPDVEIHIDYQAQGREARVSAVSSSGHSLLARL 151


>YPO0369 [R] COG0802 Predicted ATPase or kinase Ype Yersinia pestis
          Length = 156

 Score =  142 bits (358), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 75/148 (50%), Positives = 92/148 (62%), Gaps = 4/148 (2%)

Query: 9   LQDEAGTAALGASLAQVLEPGMAIYLHGDLGAGKTALTRALLHAAGYPGRVKSPTYTLAE 68
           L DEA T ALGA+LAQ       IYL GDLGAGKT  +R  L A G+ G VKSPTYTL E
Sbjct: 8   LPDEAATVALGATLAQAFGGASVIYLFGDLGAGKTTFSRGFLQALGHNGHVKSPTYTLVE 67

Query: 69  PYEVKLADRMVTVIHFDLYRMASPEEFLDAGFREHFNENSICIIEWPEKGDPVLPPPDIN 128
           PY   L  R   V HFDLYR+A PEE    G R++F+  +IC++EWP++G   LP  D+ 
Sbjct: 68  PY--TLTPR--PVYHFDLYRLADPEELEFMGIRDYFDPQAICLVEWPQQGAGFLPQADVE 123

Query: 129 ISLTVAGHGRDVELRALSDKGHQCLARL 156
           + LT    GR+  L A+S+ G   L RL
Sbjct: 124 LHLTYQAAGREARLVAISEAGADVLRRL 151


>yjeE [R] COG0802 Predicted ATPase or kinase Eco Escherichia coli K12
          Length = 153

 Score =  141 bits (355), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 70/153 (45%), Positives = 93/153 (60%), Gaps = 4/153 (2%)

Query: 4   SRHTHLQDEAGTAALGASLAQVLEPGMAIYLHGDLGAGKTALTRALLHAAGYPGRVKSPT 63
           +R   L DE  T  LG  +A+  +    IYL+GDLGAGKT  +R  L A G+ G VKSPT
Sbjct: 3   NRVIPLPDEQATLDLGERVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGHQGNVKSPT 62

Query: 64  YTLAEPYEVKLADRMVTVIHFDLYRMASPEEFLDAGFREHFNENSICIIEWPEKGDPVLP 123
           YTL EPY +      + V HFDLYR+A PEE    G R++F  ++IC++EWP++G  VLP
Sbjct: 63  YTLVEPYTLD----NLMVYHFDLYRLADPEELEFMGIRDYFANDAICLVEWPQQGTGVLP 118

Query: 124 PPDINISLTVAGHGRDVELRALSDKGHQCLARL 156
            PD+ I +     GR+  + A+S  G   LARL
Sbjct: 119 DPDVEIHIDYQAQGREARVSAVSSAGELLLARL 151


>ZyjeE [R] COG0802 Predicted ATPase or kinase EcZ Escherichia coli O157:H7
           EDL933
          Length = 153

 Score =  141 bits (355), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 70/153 (45%), Positives = 93/153 (60%), Gaps = 4/153 (2%)

Query: 4   SRHTHLQDEAGTAALGASLAQVLEPGMAIYLHGDLGAGKTALTRALLHAAGYPGRVKSPT 63
           +R   L DE  T  LG  +A+  +    IYL+GDLGAGKT  +R  L A G+ G VKSPT
Sbjct: 3   NRVIPLPDEQATLDLGERVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGHQGNVKSPT 62

Query: 64  YTLAEPYEVKLADRMVTVIHFDLYRMASPEEFLDAGFREHFNENSICIIEWPEKGDPVLP 123
           YTL EPY +      + V HFDLYR+A PEE    G R++F  ++IC++EWP++G  VLP
Sbjct: 63  YTLVEPYTLD----NLMVYHFDLYRLADPEELEFMGIRDYFANDAICLVEWPQQGTGVLP 118

Query: 124 PPDINISLTVAGHGRDVELRALSDKGHQCLARL 156
            PD+ I +     GR+  + A+S  G   LARL
Sbjct: 119 DPDVEIHIDYQAQGREARVSAVSSAGELLLARL 151


>ECs5144 [R] COG0802 Predicted ATPase or kinase Ecs Escherichia coli O157:H7
          Length = 153

 Score =  141 bits (355), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 70/153 (45%), Positives = 93/153 (60%), Gaps = 4/153 (2%)

Query: 4   SRHTHLQDEAGTAALGASLAQVLEPGMAIYLHGDLGAGKTALTRALLHAAGYPGRVKSPT 63
           +R   L DE  T  LG  +A+  +    IYL+GDLGAGKT  +R  L A G+ G VKSPT
Sbjct: 3   NRVIPLPDEQATLDLGERVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGHQGNVKSPT 62

Query: 64  YTLAEPYEVKLADRMVTVIHFDLYRMASPEEFLDAGFREHFNENSICIIEWPEKGDPVLP 123
           YTL EPY +      + V HFDLYR+A PEE    G R++F  ++IC++EWP++G  VLP
Sbjct: 63  YTLVEPYTLD----NLMVYHFDLYRLADPEELEFMGIRDYFANDAICLVEWPQQGTGVLP 118

Query: 124 PPDINISLTVAGHGRDVELRALSDKGHQCLARL 156
            PD+ I +     GR+  + A+S  G   LARL
Sbjct: 119 DPDVEIHIDYQAQGREARVSAVSSAGELLLARL 151