BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0035.p         (150 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGl3233 [K] COG1846 Transcriptional regulators Atu Agrobacterium...    77   1e-14
BMEII0785 [K] COG1846 Transcriptional regulators Bme Brucella me...    66   3e-11
PA1285 [K] COG1846 Transcriptional regulators Pae Pseudomonas ae...    63   2e-10
Rv1049 [K] COG1846 Transcriptional regulators Mtu Mycobacterium ...    62   4e-10
MT1079 [K] COG1846 Transcriptional regulators MtC Mycobacterium ...    62   4e-10

>AGl3233 [K] COG1846 Transcriptional regulators Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 133

 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 70/133 (52%), Gaps = 5/133 (3%)

Query: 3   NQCTCTRLRRLTRRITSIYDRHLLPDALTISQYSLLSRVGRHGSIANLRLAAEMGMDRST 62
           ++C C  LR+ +R+++S YD  L P  + I Q+SLL  + R   ++   LAA + +DRST
Sbjct: 4   DRCHCILLRKASRKVSSYYDEALAPLGVNIGQFSLLRNINRTAPVSLTDLAARVELDRST 63

Query: 63  LSRNIKPLMAAGWIATVDMPPDEQVDKRSFGLGLSEAGQAKLAAARPNWVAAQLEIDGLL 122
           + RN + L   G +A          D+R   L ++E GQA L A  P W   Q EI+  L
Sbjct: 64  VGRNARVLARMGLVAI-----GHGEDQREAMLTVTEEGQAILKAGAPLWDGVQDEIEARL 118

Query: 123 GEDLHAALSGMIG 135
           G +  A L  ++ 
Sbjct: 119 GPEKTAQLQELLA 131


>BMEII0785 [K] COG1846 Transcriptional regulators Bme Brucella melitensis
          Length = 149

 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 3   NQCTCTRLRRLTRRITSIYDRHLLPDALTISQYSLLSRVGRHGSIANLRLAAEMGMDRST 62
           + C C  ++R  R +  ++D  L P  LT  Q+SL+  + R        +A  + MD++T
Sbjct: 17  DTCLCLHVQRAARALARLFDEALRPAGLTNGQFSLMMSLNRPSPPPMKPVAELLAMDQTT 76

Query: 63  LSRNIKPLMAAGWIATVDMPPDEQVDKRSFGLGLSEAGQAKLAAARPNWVAAQLEIDGLL 122
           L+  +KPL   GW+  +  P     D+R   L L+  G+A LA+A P W A   +I+  L
Sbjct: 77  LTAALKPLQRRGWVEILVNP----ADRRERLLQLTAEGKAVLASAVPIWTATHAQIEARL 132

Query: 123 G 123
            
Sbjct: 133 A 133


>PA1285 [K] COG1846 Transcriptional regulators Pae Pseudomonas aeruginosa
          Length = 149

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 62/123 (50%), Gaps = 5/123 (4%)

Query: 3   NQCTCTRLRRLTRRITSIYDRHLLPDALTISQYSLLSRVGRHGSIANLRLAAEMGMDRST 62
            QC CT+LRR  R ++  YD  L    L ++Q+SLL  + R    +   LA  MG+DRST
Sbjct: 16  TQCLCTKLRRAARSVSRFYDEALADTGLKVAQFSLLRHLRRLDRPSISELAEAMGLDRST 75

Query: 63  LSRNIKPLMAAGWIATVDMPPDEQVDKRSFGLGLSEAGQAKLAAARPNWVAAQLEIDGLL 122
           L RN++ L   G +           D+R+  + L+ AG   L    P W  AQ  + G L
Sbjct: 76  LGRNLRVLEGDGLLRLTGGE-----DQRNRLVELTPAGLDALERGTPAWEDAQRRLAGRL 130

Query: 123 GED 125
           GE+
Sbjct: 131 GEE 133


>Rv1049 [K] COG1846 Transcriptional regulators Mtu Mycobacterium
           tuberculosis H37Rv
          Length = 148

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 10/128 (7%)

Query: 2   FNQCTCTRLRRLTRRITSIYDRHLLPDALTISQYSLLSRVGRHGSIANL-----RLAAEM 56
           F++C C   RR  R++   YDR L P  LT +Q+S L+ +      A +      LAA +
Sbjct: 7   FDECACYTTRRAARQLGQAYDRALRPSGLTNTQFSTLAVISLSEGSAGIDLTMSELAARI 66

Query: 57  GMDRSTLSRNIKPLMAAGWIATVDMPPDEQVDKRSFGLGLSEAGQAKLAAARPNWVAAQL 116
           G++R+TL+RN++ +   G +  +        D R   + L+  G+A L  A P W   Q 
Sbjct: 67  GVERTTLTRNLEVMRRDGLVRVM-----AGADARCKRIELTAKGRAALQKAVPLWRGVQA 121

Query: 117 EIDGLLGE 124
           E+   +G+
Sbjct: 122 EVTASVGD 129


>MT1079 [K] COG1846 Transcriptional regulators MtC Mycobacterium
           tuberculosis CDC1551
          Length = 148

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 10/128 (7%)

Query: 2   FNQCTCTRLRRLTRRITSIYDRHLLPDALTISQYSLLSRVGRHGSIANL-----RLAAEM 56
           F++C C   RR  R++   YDR L P  LT +Q+S L+ +      A +      LAA +
Sbjct: 7   FDECACYTTRRAARQLGQAYDRALRPSGLTNTQFSTLAVISLSEGSAGIDLTMSELAARI 66

Query: 57  GMDRSTLSRNIKPLMAAGWIATVDMPPDEQVDKRSFGLGLSEAGQAKLAAARPNWVAAQL 116
           G++R+TL+RN++ +   G +  +        D R   + L+  G+A L  A P W   Q 
Sbjct: 67  GVERTTLTRNLEVMRRDGLVRVM-----AGADARCKRIELTAKGRAALQKAVPLWRGVQA 121

Query: 117 EIDGLLGE 124
           E+   +G+
Sbjct: 122 EVTASVGD 129