BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0025.p         (82 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sll1270_2 [E] COG0765 ABC-type amino acid transport system, perm...    81   5e-16
alr3187_2 [E] COG0765 ABC-type amino acid transport system, perm...    77   1e-14
SMc03865 [E] COG0765 ABC-type amino acid transport system, perme...    74   7e-14
YPO2513 [E] COG0765 ABC-type amino acid transport system, permea...    71   8e-13
glnP [E] COG0765 ABC-type amino acid transport system, permease ...    70   1e-12

>sll1270_2 [E] COG0765 ABC-type amino acid transport system, permease
           component Syn Synechocystis
          Length = 255

 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 55/70 (78%)

Query: 1   MIPPLGNEFIALIKNSALVSLLTIADLMHEGQKIISVSYRSLEVYIAVALVYLVLTSLTS 60
           ++PPLGNEFI LIK+++L +++   +L  EGQ I++ +YR+ EVYIAVALVYL+LT+++S
Sbjct: 171 ILPPLGNEFITLIKDTSLTAVIGFQELFREGQLIVATTYRAFEVYIAVALVYLLLTTISS 230

Query: 61  MALQRVEKHL 70
              + +E ++
Sbjct: 231 FVFKWLENYM 240


>alr3187_2 [E] COG0765 ABC-type amino acid transport system, permease
           component Nos Nostoc sp. PCC 7120
          Length = 240

 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 54/77 (70%)

Query: 1   MIPPLGNEFIALIKNSALVSLLTIADLMHEGQKIISVSYRSLEVYIAVALVYLVLTSLTS 60
           M+PPLGNEFI+L+K+++LV+++   +L  +GQ I++ +YR+ E+Y AVA+VYL LT L S
Sbjct: 158 MLPPLGNEFISLLKDTSLVAVIGFEELFRKGQLIVADNYRAFEIYAAVAIVYLCLTLLAS 217

Query: 61  MALQRVEKHLRADKATQ 77
             L R+E  +      Q
Sbjct: 218 QVLSRLEMWMNPTMKAQ 234


>SMc03865 [E] COG0765 ABC-type amino acid transport system, permease
           component Sme Sinorhizobium meliloti
          Length = 273

 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 53/74 (71%)

Query: 1   MIPPLGNEFIALIKNSALVSLLTIADLMHEGQKIISVSYRSLEVYIAVALVYLVLTSLTS 60
           ++PPLGN+F+A++K+S+LVS+L +AD+   G+   S S+R  E Y  VA VYLVLT   S
Sbjct: 198 ILPPLGNDFVAMVKDSSLVSVLGVADITQMGKVYASGSFRFFETYSIVAYVYLVLTIGLS 257

Query: 61  MALQRVEKHLRADK 74
           +AL+ VE+ LR  +
Sbjct: 258 LALRAVERRLRRSQ 271


>YPO2513 [E] COG0765 ABC-type amino acid transport system, permease
           component Ype Yersinia pestis
          Length = 218

 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 56/71 (78%)

Query: 1   MIPPLGNEFIALIKNSALVSLLTIADLMHEGQKIISVSYRSLEVYIAVALVYLVLTSLTS 60
           M+PPLGN++I  IK+++L  ++ +A+L  +GQ+II+ ++R++E++ AVA++YL++T   S
Sbjct: 146 MLPPLGNQWIVSIKDTSLFIVIGVAELTRQGQEIIAGNFRAMEIWSAVAVIYLIITLALS 205

Query: 61  MALQRVEKHLR 71
             L+R+E+ L+
Sbjct: 206 FVLRRLERKLK 216


>glnP [E] COG0765 ABC-type amino acid transport system, permease
           component Eco Escherichia coli K12
          Length = 219

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 56/71 (78%)

Query: 1   MIPPLGNEFIALIKNSALVSLLTIADLMHEGQKIISVSYRSLEVYIAVALVYLVLTSLTS 60
           M+PPLGN++I  IK+++L  ++ +A+L  +GQ+II+ ++R+LE++ AVA+ YL++T + S
Sbjct: 147 MLPPLGNQWIISIKDTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVFYLIITLVLS 206

Query: 61  MALQRVEKHLR 71
             L+R+E+ ++
Sbjct: 207 FILRRLERRMK 217