BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0194.p         (77 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3341 [E] COG0559 Branched-chain amino acid ABC-type transport...   125   3e-29
AGl1455 [E] COG0559 Branched-chain amino acid ABC-type transport...   100   7e-22
BMEII0341 [E] COG0559 Branched-chain amino acid ABC-type transpo...   100   1e-21
SMc03118 [E] COG0559 Branched-chain amino acid ABC-type transpor...    96   3e-20
mll7173 Non COG                                                        57   8e-09

>RSc3341 [E] COG0559 Branched-chain amino acid ABC-type transport system,
           permease components Rso Ralstonia solanacearum
          Length = 313

 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/77 (81%), Positives = 73/77 (94%)

Query: 1   VIQVSPLMGSNLIIVVFAVVVIGGMGSILGSIVTGLGLGVIEGLTRVFYPELSATVVFII 60
           VIQ+SPLMG N+II VFAVVVIGGMGSILGSIVTGLGLGVIEGLT+V YP+ S+TVVF+I
Sbjct: 237 VIQISPLMGQNMIITVFAVVVIGGMGSILGSIVTGLGLGVIEGLTKVVYPQASSTVVFVI 296

Query: 61  MAIVLMIRPAGLFGKEK 77
           MA+VL++RPAGLFG+EK
Sbjct: 297 MALVLLVRPAGLFGREK 313


>AGl1455 [E] COG0559 Branched-chain amino acid ABC-type transport system,
           permease components Atu Agrobacterium tumefaciens strain
           C58 (Cereon)
          Length = 295

 Score =  100 bits (250), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 1   VIQVSPLMGSNLIIVVFAVVVIGGMGSILGSIVTGLGLGVIEGLTRVFYPELSATVVFII 60
           + QVSPLMG+NLIIVVFAVVV+GGMGSI+G+IVTG  LG+ EGLT+VFYPE S  V+F+I
Sbjct: 219 IYQVSPLMGTNLIIVVFAVVVVGGMGSIMGAIVTGYMLGIAEGLTKVFYPEASNIVIFVI 278

Query: 61  MAIVLMIRPAGLFGKEK 77
           MA VL+IRPAGLFGK+ 
Sbjct: 279 MAFVLLIRPAGLFGKDA 295


>BMEII0341 [E] COG0559 Branched-chain amino acid ABC-type transport system,
           permease components Bme Brucella melitensis
          Length = 295

 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/77 (76%), Positives = 70/77 (90%)

Query: 1   VIQVSPLMGSNLIIVVFAVVVIGGMGSILGSIVTGLGLGVIEGLTRVFYPELSATVVFII 60
           + QVSPLMGSN+IIVVFAVVV+GGMGSILG+I+TG  LG+ EGLT+VFYPE S+ VVF+I
Sbjct: 219 IYQVSPLMGSNIIIVVFAVVVVGGMGSILGAIITGYVLGIAEGLTKVFYPEASSIVVFVI 278

Query: 61  MAIVLMIRPAGLFGKEK 77
           MAIVL++RPAGLFGKE 
Sbjct: 279 MAIVLLVRPAGLFGKEA 295


>SMc03118 [E] COG0559 Branched-chain amino acid ABC-type transport system,
           permease components Sme Sinorhizobium meliloti
          Length = 295

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 69/77 (89%)

Query: 1   VIQVSPLMGSNLIIVVFAVVVIGGMGSILGSIVTGLGLGVIEGLTRVFYPELSATVVFII 60
           + QVSPLMGSN+IIVVFAVVV+GGMGSI+G+IVTG  LG+ EGLT+VFYPE S  V+F+I
Sbjct: 219 IYQVSPLMGSNIIIVVFAVVVVGGMGSIMGAIVTGYLLGIAEGLTKVFYPEASNIVIFVI 278

Query: 61  MAIVLMIRPAGLFGKEK 77
           MAIVL++RPAGLFG++ 
Sbjct: 279 MAIVLLLRPAGLFGRDA 295


>mll7173 Non COG
          Length = 302

 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 54/79 (68%), Gaps = 2/79 (2%)

Query: 1   VIQVSPLMGSNLIIVVFAVVVIGGMGSILGSIVTGLGLGVIE-GLTRVFYPELSATVVFI 59
           ++Q+ P MG ++++ +FA  ++GG+GSI G+++ GL +G+ E G  ++   E  A V FI
Sbjct: 224 LVQIRPFMGFDMLLPMFAAAILGGIGSIPGAVLGGLIIGLAEAGAVQLIGAEWRAAVSFI 283

Query: 60  IMAIVLMIRPAGLFG-KEK 77
           I+  VL +RP GLFG +E+
Sbjct: 284 ILMAVLFVRPIGLFGVRER 302