BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0192.p (436 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3340 [E] COG4177 ABC-type branched-chain amino acid transport... 385 e-106 SMc03117 [E] COG4177 ABC-type branched-chain amino acid transpor... 310 6e-84 BMEII0340 [E] COG4177 ABC-type branched-chain amino acid transpo... 286 5e-77 AGl1453 [E] COG4177 ABC-type branched-chain amino acid transport... 277 3e-74 RSc2247 [E] COG4177 ABC-type branched-chain amino acid transport... 107 6e-23 >RSc3340 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Rso Ralstonia solanacearum Length = 328 Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust. Identities = 208/302 (68%), Positives = 240/302 (79%), Gaps = 10/302 (3%) Query: 122 YDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWSGHAAFFGGAGYVAGQAIKAW 181 Y V KLL F L A S L+LG+ L GHAAFFGGAGYVAG ++ Sbjct: 28 YPVFVAKLLCFALFA-------SAFNLLLGYTGLLSF---GHAAFFGGAGYVAGYLMRDL 77 Query: 182 GVPTEIGLILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDG 241 + E+GLI GT GALIGLV+GLLAIRRQGIYF MITLALAQM +F LQAPFTGGEDG Sbjct: 78 NLTPELGLIAGTAAGALIGLVVGLLAIRRQGIYFAMITLALAQMFYFFCLQAPFTGGEDG 137 Query: 242 LQGIPRGKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKAIKENEPRAIS 301 LQG+PRGKLLG +DLSSD+TLYY VLA+ + F LIVRTIHSPFGQ+LKAIKENEPRAIS Sbjct: 138 LQGVPRGKLLGMLDLSSDLTLYYFVLAVVVVAFLLIVRTIHSPFGQILKAIKENEPRAIS 197 Query: 302 LGYDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWSMSGLVVLMTLVGGLGTIV 361 LGYD DR+KLLAFVLSAAL+GLAG+ K L+LGFETLTDVHW+MSG V+LMTLVGGLG + Sbjct: 198 LGYDTDRFKLLAFVLSAALSGLAGALKTLVLGFETLTDVHWAMSGSVILMTLVGGLGILS 257 Query: 362 GPIVGAVIIIMLENKLGDIGNWLASVTHIEWFNTLGDSVTIVTGFIFIVCVLAFRRGIVG 421 GPI+GA ++I LENKLGD+G +LA T ++ FN LG+SVT VTG IF++CVL FRRGI+G Sbjct: 258 GPILGAALVIALENKLGDLGAFLAGATGMDGFNVLGESVTTVTGAIFVICVLTFRRGIMG 317 Query: 422 EI 423 EI Sbjct: 318 EI 319 Score = 251 bits (641), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 128/158 (81%), Positives = 142/158 (89%) Query: 4 EIGLILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDGLQGI 63 E+GLI GT GALIGLV+GLLAIRRQGIYF MITLALAQM +F LQAPFTGGEDGLQG+ Sbjct: 82 ELGLIAGTAAGALIGLVVGLLAIRRQGIYFAMITLALAQMFYFFCLQAPFTGGEDGLQGV 141 Query: 64 PRGKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKAIKENEPRAISLGYD 123 PRGKLLG +DLSSD+TLYY VLA+ + F LIVRTIHSPFGQ+LKAIKENEPRAISLGYD Sbjct: 142 PRGKLLGMLDLSSDLTLYYFVLAVVVVAFLLIVRTIHSPFGQILKAIKENEPRAISLGYD 201 Query: 124 VDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWS 161 DR+KLLAFVLSAAL+GLAG+ K L+LGFETLTDVHW+ Sbjct: 202 TDRFKLLAFVLSAALSGLAGALKTLVLGFETLTDVHWA 239 >SMc03117 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Sme Sinorhizobium meliloti Length = 330 Score = 310 bits (793), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 168/304 (55%), Positives = 204/304 (67%), Gaps = 26/304 (8%) Query: 122 YDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWSGHAAFFGGAGYVAGQAIKAW 181 Y V K+L F L A L+LG+ L GHAAFFGGA Y A+K W Sbjct: 38 YPVFLMKILCFALFAC-------AFNLLLGYTGLLSF---GHAAFFGGAAYFTAHAVKEW 87 Query: 182 GVPTEIGLILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDG 241 GVP E+G++LG + AL+G V+G AIRRQGIYF MITLALAQM +F LQA FT GEDG Sbjct: 88 GVPPELGILLGVVGAALLGAVVGFFAIRRQGIYFAMITLALAQMFYFFCLQAGFTRGEDG 147 Query: 242 LQGIPRGKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKAIKENEPRAIS 301 +Q +PRG LLGFIDLS +YY VLA+ + G A+I R I+SPFG +LK+I+ENE RAIS Sbjct: 148 IQSVPRGHLLGFIDLSQPTNMYYFVLAVFVIGIAMIWRIINSPFGMILKSIRENETRAIS 207 Query: 302 LGYDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWSMSGLVVLMTLVGGLGTIV 361 LGY V YKL AFV+SAALTGLAG KAL+ F TLTDV W MSG V+LMTL+GG+GT++ Sbjct: 208 LGYSVRNYKLAAFVMSAALTGLAGGLKALVFQFATLTDVSWQMSGEVILMTLLGGIGTLI 267 Query: 362 GPIVGAVIIIMLENKLGDIGNWLASVTHIEWFNTLGDSVTIVTGFIFIVCVLAFRRGIVG 421 GP+ GA +++ L+N L T VTI+TG +F+VCVL FRRGIVG Sbjct: 268 GPLFGAGLVVTLQNYLA----------------TSEFPVTIITGIVFMVCVLLFRRGIVG 311 Query: 422 EILN 425 E N Sbjct: 312 EFYN 315 Score = 209 bits (533), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 104/161 (64%), Positives = 123/161 (76%) Query: 1 VPTEIGLILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDGL 60 VP E+G++LG + AL+G V+G AIRRQGIYF MITLALAQM +F LQA FT GEDG+ Sbjct: 89 VPPELGILLGVVGAALLGAVVGFFAIRRQGIYFAMITLALAQMFYFFCLQAGFTRGEDGI 148 Query: 61 QGIPRGKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKAIKENEPRAISL 120 Q +PRG LLGFIDLS +YY VLA+ + G A+I R I+SPFG +LK+I+ENE RAISL Sbjct: 149 QSVPRGHLLGFIDLSQPTNMYYFVLAVFVIGIAMIWRIINSPFGMILKSIRENETRAISL 208 Query: 121 GYDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWS 161 GY V YKL AFV+SAALTGLAG KAL+ F TLTDV W Sbjct: 209 GYSVRNYKLAAFVMSAALTGLAGGLKALVFQFATLTDVSWQ 249 >BMEII0340 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Bme Brucella melitensis Length = 331 Score = 286 bits (733), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 147/251 (58%), Positives = 177/251 (70%), Gaps = 16/251 (6%) Query: 172 YVAGQAIKAWGVPTEIGLILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVAL 231 YV A+K WGV E+GL+LG L A +GLV+G LAIRRQGIY TMITLALAQM FF L Sbjct: 85 YVTAHAVKEWGVSPELGLVLGILAAAALGLVIGYLAIRRQGIYSTMITLALAQMFFFFCL 144 Query: 232 QAPFTGGEDGLQGIPRGKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKA 291 QA FT GEDGLQG+PRG L GFIDL+ M +YY VLA+ + G I R +SPFG +LK+ Sbjct: 145 QASFTHGEDGLQGVPRGFLFGFIDLNQPMNMYYFVLAVFVLGVFAIWRITNSPFGMILKS 204 Query: 292 IKENEPRAISLGYDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWSMSGLVVLM 351 ++ENE RAISLG+ V+ YKL AFV+SA L GLAG KAL+ F TLTDV W MSG V+LM Sbjct: 205 VRENENRAISLGFSVNHYKLAAFVMSAGLAGLAGGMKALVFQFATLTDVSWQMSGEVILM 264 Query: 352 TLVGGLGTIVGPIVGAVIIIMLENKLGDIGNWLASVTHIEWFNTLGDSVTIVTGFIFIVC 411 TL+GG+GT++GPIVGA ++ L+N W T VTIVTG IF+ C Sbjct: 265 TLLGGIGTLIGPIVGAAFVVALKN----------------WLATSDFPVTIVTGLIFMAC 308 Query: 412 VLAFRRGIVGE 422 VL FR+GI+GE Sbjct: 309 VLLFRKGIIGE 319 Score = 203 bits (517), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 102/161 (63%), Positives = 120/161 (74%) Query: 1 VPTEIGLILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDGL 60 V E+GL+LG L A +GLV+G LAIRRQGIY TMITLALAQM FF LQA FT GEDGL Sbjct: 96 VSPELGLVLGILAAAALGLVIGYLAIRRQGIYSTMITLALAQMFFFFCLQASFTHGEDGL 155 Query: 61 QGIPRGKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKAIKENEPRAISL 120 QG+PRG L GFIDL+ M +YY VLA+ + G I R +SPFG +LK+++ENE RAISL Sbjct: 156 QGVPRGFLFGFIDLNQPMNMYYFVLAVFVLGVFAIWRITNSPFGMILKSVRENENRAISL 215 Query: 121 GYDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWS 161 G+ V+ YKL AFV+SA L GLAG KAL+ F TLTDV W Sbjct: 216 GFSVNHYKLAAFVMSAGLAGLAGGMKALVFQFATLTDVSWQ 256 >AGl1453 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 335 Score = 277 bits (709), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 160/301 (53%), Positives = 200/301 (66%), Gaps = 26/301 (8%) Query: 122 YDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWSGHAAFFGGAGYVAGQAIKAW 181 Y + KLL F L A L++G+ L GHAAFFGGA Y ++K W Sbjct: 45 YPIFLMKLLCFALFAC-------AFNLLIGYTGLLSF---GHAAFFGGAAYFTAYSVKEW 94 Query: 182 GVPTEIGLILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDG 241 GV EIGLI+G AL+GLV+G AIRRQGIYF MITLAL+QM +F LQAPFT GEDG Sbjct: 95 GVTPEIGLIIGMAGAALLGLVIGFFAIRRQGIYFAMITLALSQMFYFFCLQAPFTHGEDG 154 Query: 242 LQGIPRGKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKAIKENEPRAIS 301 LQG+PRG L G +DL++ + +YY VLA + +I R ++SPFG +LK+I+ENE RAIS Sbjct: 155 LQGVPRGHLFGLLDLNAPLNIYYTVLAAFVLALLVIWRFVNSPFGMILKSIRENEQRAIS 214 Query: 302 LGYDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWSMSGLVVLMTLVGGLGTIV 361 LGY V RYKL AFV+SAAL GLAG KAL+ F TLTDV W MSG V+LMTL+GG+GT++ Sbjct: 215 LGYSVQRYKLGAFVMSAALAGLAGGLKALVFQFATLTDVTWQMSGEVILMTLLGGIGTMI 274 Query: 362 GPIVGAVIIIMLENKLGDIGNWLASVTHIEWFNTLGDSVTIVTGFIFIVCVLAFRRGIVG 421 GPI GA +++ L+N L T VTI+TG +F+ CVL FRRG++G Sbjct: 275 GPIFGAGLVVTLQNYLA----------------TSDFPVTIITGLVFMACVLVFRRGLIG 318 Query: 422 E 422 E Sbjct: 319 E 319 Score = 183 bits (465), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 101/161 (62%), Positives = 121/161 (75%) Query: 1 VPTEIGLILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDGL 60 V EIGLI+G AL+GLV+G AIRRQGIYF MITLAL+QM +F LQAPFT GEDGL Sbjct: 96 VTPEIGLIIGMAGAALLGLVIGFFAIRRQGIYFAMITLALSQMFYFFCLQAPFTHGEDGL 155 Query: 61 QGIPRGKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKAIKENEPRAISL 120 QG+PRG L G +DL++ + +YY VLA + +I R ++SPFG +LK+I+ENE RAISL Sbjct: 156 QGVPRGHLFGLLDLNAPLNIYYTVLAAFVLALLVIWRFVNSPFGMILKSIRENEQRAISL 215 Query: 121 GYDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWS 161 GY V RYKL AFV+SAAL GLAG KAL+ F TLTDV W Sbjct: 216 GYSVQRYKLGAFVMSAALAGLAGGLKALVFQFATLTDVTWQ 256 >RSc2247 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Rso Ralstonia solanacearum Length = 341 Score = 107 bits (267), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 86/246 (34%), Positives = 127/246 (51%), Gaps = 7/246 (2%) Query: 138 LTGLAGSTKALILGFETLTDVHWSGHAAFFGGAGYVAGQ-AIKAWGVPTEIGLILGTLTG 196 + GL + L+LG+ + + GHA FFG Y AG A WG P GL+ Sbjct: 57 IVGLFALSLDLVLGYAGIVSL---GHAGFFGLGAYTAGLLAAHGWGEPLS-GLVAAAAVA 112 Query: 197 ALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPF-TGGEDGLQGIPRGKLLGFID 255 AL G + L +R Q + M+TL + ML+ A + F TGG DGL G+ KLLG + Sbjct: 113 ALTGCCVSFLVVRGQDLTRLMVTLGIGLMLYEAANKMAFLTGGVDGLSGVTMDKLLGSFE 172 Query: 256 LS-SDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKAIKENEPRAISLGYDVDRYKLLAF 314 S T Y LA+ F L+ R + SPFG L+ I++ R +LG DV + AF Sbjct: 173 FDLSGRTAYVYSLAVLFGLFVLLRRLVRSPFGLSLRGIQQGPGRMPALGADVRMRLVAAF 232 Query: 315 VLSAALTGLAGSTKALILGFETLTDVHWSMSGLVVLMTLVGGLGTIVGPIVGAVIIIMLE 374 +SAA+ G+AG A F L + +S S +++M ++GG G + G +VGA + ++ + Sbjct: 233 TVSAAVAGVAGGLLAQTTQFVGLDALGFSRSAELLIMLVLGGAGRLYGALVGAAVFMLAQ 292 Query: 375 NKLGDI 380 + L I Sbjct: 293 DVLAGI 298 Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 85/172 (49%), Gaps = 7/172 (4%) Query: 16 LIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPF-TGGEDGLQGIPRGKLLGFIDL 74 L G + L +R Q + M+TL + ML+ A + F TGG DGL G+ KLLG + Sbjct: 114 LTGCCVSFLVVRGQDLTRLMVTLGIGLMLYEAANKMAFLTGGVDGLSGVTMDKLLGSFEF 173 Query: 75 S-SDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKAIKENEPRAISLGYDVDRYKLLAFV 133 S T Y LA+ F L+ R + SPFG L+ I++ R +LG DV + AF Sbjct: 174 DLSGRTAYVYSLAVLFGLFVLLRRLVRSPFGLSLRGIQQGPGRMPALGADVRMRLVAAFT 233 Query: 134 LSAALTGLAGSTKALILGFETLTDVHWSGHAAF-----FGGAGYVAGQAIKA 180 +SAA+ G+AG A F L + +S A GGAG + G + A Sbjct: 234 VSAAVAGVAGGLLAQTTQFVGLDALGFSRSAELLIMLVLGGAGRLYGALVGA 285