BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0176.p (293 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3325 [K] COG1475 Predicted transcriptional regulators Rso Ral... 374 e-103 XF2281 [K] COG1475 Predicted transcriptional regulators Xfa Xyle... 250 3e-66 PA5562 [K] COG1475 Predicted transcriptional regulators Pae Pseu... 248 1e-65 NMA0508 [K] COG1475 Predicted transcriptional regulators NmA Nei... 241 2e-63 NMB1944 [K] COG1475 Predicted transcriptional regulators Nme Nei... 234 2e-61 >RSc3325 [K] COG1475 Predicted transcriptional regulators Rso Ralstonia solanacearum Length = 303 Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust. Identities = 193/304 (63%), Positives = 235/304 (77%), Gaps = 15/304 (4%) Query: 1 MATKKSKGLGRGLDALLGGSSDMTEDEPVVA---GSPSVMAVTELQAGKYQPRSRMDEGA 57 M+T K KGLGRGL+ALLG +++ E VA G+P+V+ + ++Q GKYQPR+RMDEGA Sbjct: 1 MSTLKKKGLGRGLEALLGSPAEIVE----VARQDGAPTVLKLEQMQPGKYQPRTRMDEGA 56 Query: 58 LNELAASIKEQGLLQPILIRAIGQKNGKDIYEIIAGERRFRAAKIAGLTEVPVLVKNVDD 117 L ELAASI+ QGL+QPIL+R + YEIIAGERRFRA+++AGLTEVPVLVK+V D Sbjct: 57 LQELAASIRAQGLMQPILVRKVDSDGAAQKYEIIAGERRFRASRLAGLTEVPVLVKDVPD 116 Query: 118 QTTAAMALIENMQREDLNPLEEAQGIHRLITDFNFTHEQAAVAVGRSRSAVSNLLRLLNL 177 + AAMALIEN+QREDLNPLEEAQGI RLI +F FTHEQAA ++GRSRSAVSNLLRLLNL Sbjct: 117 EAAAAMALIENIQREDLNPLEEAQGIARLIREFQFTHEQAAESLGRSRSAVSNLLRLLNL 176 Query: 178 AKPVQTMLMAGDIDMGHARALLAVDSATQITLANQIVAKRMSVREAEKLXSN--KP---- 231 A+PVQTMLMAGD+DMGHAR LLAVD A+QITLANQI+ KR+SVRE EKL ++ KP Sbjct: 177 AQPVQTMLMAGDLDMGHARTLLAVDGASQITLANQIINKRLSVRETEKLVASTLKPFELK 236 Query: 232 --RDGGKEKSRDITRLEEELSDLLATQVSIKTGAKNRGQLIINFSDLDALDGVIARLRGE 289 R + RD+ RLEEEL+D+L V IK AK RGQL + F LD DG++ARLR + Sbjct: 237 SQRQKNGQNGRDVARLEEELADMLGLPVQIKLAAKGRGQLTVQFGSLDEFDGLLARLRPD 296 Query: 290 AVEQ 293 ++ Sbjct: 297 GADE 300 >XF2281 [K] COG1475 Predicted transcriptional regulators Xfa Xylella fastidiosa 9a5c Length = 310 Score = 250 bits (638), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 149/301 (49%), Positives = 200/301 (66%), Gaps = 22/301 (7%) Query: 5 KSKGLGRGLDALLGGSSDMTEDEPVVAGS-PS----VMAVTELQAGKYQPRSRMDEGALN 59 K +GLGRGL+ALLG + V G P + +T+LQ KYQPR M E L Sbjct: 9 KKRGLGRGLEALLGSKGGSSVPPTVAEGQLPGEVLRTLQITQLQPSKYQPRREMSEPKLA 68 Query: 60 ELAASIKEQGLLQPILIRAIGQKNGKDIYEIIAGERRFRAAKIAGLTEVPVLVKNVDDQT 119 ELA SIK QG++QPI++R + D++EI+AGERR+RA+++AGLTEVPVLV+ +DD+T Sbjct: 69 ELADSIKAQGVIQPIIVRELD----VDMFEIVAGERRWRASQLAGLTEVPVLVRELDDRT 124 Query: 120 TAAMALIENMQREDLNPLEEAQGIHRLITDFNFTHEQAAVAVGRSRSAVSNLLRLLNLAK 179 AMALIEN+QREDLNPLEEAQ + RLI +F+ TH +AA AVGRSR+AVSNLLRLL L Sbjct: 125 VVAMALIENIQREDLNPLEEAQALQRLIDEFSLTHAEAAEAVGRSRAAVSNLLRLLELPL 184 Query: 180 PVQTMLMAGDIDMGHARALLAVDSATQITLANQIVAKRMSVRE----AEKLXSNKPRDGG 235 ++T+L + ++MGHARALL + LA + + SVRE A++ + K D Sbjct: 185 GIRTLLQSRRLEMGHARALLTLAPELADKLAKEAADQGWSVREVEHRAQQFAAGKVPDIR 244 Query: 236 KEKSR---------DITRLEEELSDLLATQVSIKTGAKNRGQLIINFSDLDALDGVIARL 286 +KS+ DI LE ELS+ L T+V+I G +G+L+I+++DLD LDGV+ RL Sbjct: 245 DKKSKSPASAPAQPDIASLETELSEHLGTKVAINHGRAGKGKLVIHYTDLDVLDGVLERL 304 Query: 287 R 287 R Sbjct: 305 R 305 >PA5562 [K] COG1475 Predicted transcriptional regulators Pae Pseudomonas aeruginosa Length = 290 Score = 248 bits (633), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 145/295 (49%), Positives = 193/295 (65%), Gaps = 13/295 (4%) Query: 1 MATKKSKGLGRGLDALLGGSSDMTEDEPVVAGSPSVMAVTEL---QAGKYQPRSRMDEGA 57 MA KK +GLGRGLDALLGGSS E V + L Q GKYQPR MD A Sbjct: 1 MAAKK-RGLGRGLDALLGGSSPAKLQEEAVQADRRELQQIPLDLMQRGKYQPRRDMDPQA 59 Query: 58 LNELAASIKEQGLLQPILIRAIGQKNGKDIYEIIAGERRFRAAKIAGLTEVPVLVKNVDD 117 L ELA SIK QG++QPI++R I NG+ YEIIAGERR+RA++ AGL ++P LV++V D Sbjct: 60 LEELAQSIKAQGVMQPIVVRPIA--NGR--YEIIAGERRWRASQQAGLEKIPALVRDVPD 115 Query: 118 QTTAAMALIENMQREDLNPLEEAQGIHRLITDFNFTHEQAAVAVGRSRSAVSNLLRLLNL 177 + AMALIEN+QREDLNP+EEA + RL +F T +Q A AVG+SR+ ++NLLRL+ L Sbjct: 116 EAAIAMALIENIQREDLNPIEEAAALQRLQQEFQLTQQQVAEAVGKSRATITNLLRLIGL 175 Query: 178 AKPVQTMLMAGDIDMGHARALLAVDSATQITLANQIVAKRMSVREAEKLXSNKPRDGGK- 236 + ++T+L GD++MGHARALL + + Q+ A +VA ++VR+ E L GK Sbjct: 176 PEEIKTLLSHGDLEMGHARALLGLPAERQVEGARHVVAHGLTVRQTEALVRQWTHAPGKP 235 Query: 237 ----EKSRDITRLEEELSDLLATQVSIKTGAKNRGQLIINFSDLDALDGVIARLR 287 + DI RLE+ L++ L V I+ G K +GQL+I +S LD L GV+A +R Sbjct: 236 AGPVKSDPDIARLEQRLAERLGASVQIRHGQKGKGQLVIRYSSLDELQGVLAHIR 290 >NMA0508 [K] COG1475 Predicted transcriptional regulators NmA Neisseria meningitidis Z2491 Length = 286 Score = 241 bits (614), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 129/283 (45%), Positives = 187/283 (66%), Gaps = 13/283 (4%) Query: 8 GLGRGLDALLGGSSDMTEDEPVVAGSPSVMAVTELQAGKYQPRSRMDEGALNELAASIKE 67 GLGRGLD+LL +D + + + + +AV +++ G+YQ R ++D+ AL ELA SIK Sbjct: 7 GLGRGLDSLLANGADNSSGDRL-----TTVAVKDIRPGRYQARVQIDDEALQELADSIKA 61 Query: 68 QGLLQPILIRAIGQKNGKDIYEIIAGERRFRAAKIAGLTEVPVLVKNVDDQTTAAMALIE 127 QG++QP+++R ++G YE+IAGERR+RAA+IAGLTE+P ++K + D+T AM LIE Sbjct: 62 QGVIQPVIVR----EHGLSRYELIAGERRWRAAQIAGLTEIPAVIKTISDETALAMGLIE 117 Query: 128 NMQREDLNPLEEAQGIHRLITDFNFTHEQAAVAVGRSRSAVSNLLRLLNLAKPVQTMLMA 187 N+QRE+LNP+EEAQG+ RL +F THE A AVG+SRSA+SN LRLL+L +PVQ ML Sbjct: 118 NLQRENLNPIEEAQGLKRLADEFGLTHETIAQAVGKSRSAISNSLRLLSLPEPVQEMLYQ 177 Query: 188 GDIDMGHARALLAVDSATQITLANQIVAKRMSVREAEKLX----SNKPRDGGKEKSRDIT 243 ++MGHARALL + Q+ LA + V SVRE E+ NK + K + DI Sbjct: 178 RRLEMGHARALLTLPVVEQLELAQKAVKNGWSVREVERRSQAALQNKRPEPKKTAAADIG 237 Query: 244 RLEEELSDLLATQVSIKTGAKNRGQLIINFSDLDALDGVIARL 286 RL + L++ L IKT +G++I++F + D ++ +L Sbjct: 238 RLNDLLTEKLGVNAEIKTANHKKGKIILHFDTPETFDHILKQL 280 >NMB1944 [K] COG1475 Predicted transcriptional regulators Nme Neisseria meningitidis MC58 Length = 286 Score = 234 bits (597), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 126/283 (44%), Positives = 185/283 (65%), Gaps = 13/283 (4%) Query: 8 GLGRGLDALLGGSSDMTEDEPVVAGSPSVMAVTELQAGKYQPRSRMDEGALNELAASIKE 67 GLGRGLD+LL +D + + + + +AV +++ G+YQ R ++D+ AL ELA SIK Sbjct: 7 GLGRGLDSLLANGADNSSGDRL-----TTVAVKDIRPGRYQARVQIDDEALQELADSIKA 61 Query: 68 QGLLQPILIRAIGQKNGKDIYEIIAGERRFRAAKIAGLTEVPVLVKNVDDQTTAAMALIE 127 QG++QP+++R ++G YE+IAGERR+RAA+IAGLTE+P ++K + D+T AM LIE Sbjct: 62 QGVIQPVIVR----EHGLSRYELIAGERRWRAAQIAGLTEIPAVIKTISDETALAMGLIE 117 Query: 128 NMQREDLNPLEEAQGIHRLITDFNFTHEQAAVAVGRSRSAVSNLLRLLNLAKPVQTMLMA 187 N+QRE+LNP+EEAQG+ RL +F THE A AVG+SRSA+SN LRLL+L +PVQ ML Sbjct: 118 NLQRENLNPIEEAQGLKRLADEFGLTHETIAQAVGKSRSAISNSLRLLSLPEPVQEMLYQ 177 Query: 188 GDIDMGHARALLAVDSATQITLANQIVAKRMSVREAEKLX----SNKPRDGGKEKSRDIT 243 ++MGHARALL + Q+ LA + V SVRE E+ NK + K + DI Sbjct: 178 RRLEMGHARALLTLPVVEQLELAQKAVKNGWSVREVERRSQAALQNKRPEPKKTAAADIG 237 Query: 244 RLEEELSDLLATQVSIKTGAKNRGQLIINFSDLDALDGVIARL 286 RL + L++ L +KT +G++++ F + ++ +L Sbjct: 238 RLNDLLTEKLGVNAEVKTANHKKGRIVLYFDTPETFGHLLEQL 280