BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0173.p (327 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1850 [K] COG4977 Transcriptional regulator containing an amida... 235 1e-61 CC2960 Non COG 197 3e-50 mll5195 [K] COG4977 Transcriptional regulator containing an amid... 182 9e-46 SMb20215 [K] COG4977 Transcriptional regulator containing an ami... 172 8e-43 mll3844 [K] COG4977 Transcriptional regulator containing an amid... 150 3e-36 >PA1850 [K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Pae Pseudomonas aeruginosa Length = 334 Score = 235 bits (599), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 134/325 (41%), Positives = 194/325 (59%), Gaps = 13/325 (4%) Query: 4 VALLVFPGVQALDVSGPLDVFAEAN----RFLLPQQHYHLSVVGSTHAPVVCSNGMQIVP 59 +A L++P V +LDV+GPL VFA AN R LP Y + V+G V S G++I Sbjct: 7 IACLIYPDVMSLDVTGPLQVFASANVERQRQGLPP-FYRIQVLGERSEAVPSSAGIRICA 65 Query: 60 HLHY-SAARENYDLLLAAGGPGLPQQERDALLSDWLAEAAQRAGRHGSICNGAFLLAHAG 118 L + E+ D LL GG G+ Q R+A L WL A R GS+C+GA +LA AG Sbjct: 66 DLAWRDCPPESLDTLLVPGGLGVEAQTRNADLLAWLKAAEPCIRRLGSVCSGALILAAAG 125 Query: 119 LLNGKRVTTHWNDAAALARDFPEVEVDADRIY-----LRDGK--LVTSAGVTAGIDLSLA 171 +L+G+ TTHW D A L + FP V V DR++ RDG + TSAGVTAGIDL+LA Sbjct: 126 VLDGRPATTHWADVATLRQGFPGVHVQGDRLHTYDPRCRDGDAHIFTSAGVTAGIDLALA 185 Query: 172 LLAEDAGQEVALNVAKRLVVFMQRSGGQSQFSPYLTPYAEETSLVGQVQHYVREHLQEKL 231 L+ D G+ +AL+VA+RLV+F++R GGQ+QFS +LTP T + + ++ +L L Sbjct: 186 LVEADLGRSLALSVARRLVMFLKRPGGQAQFSAWLTPEPSRTPRLAALLEWIPANLAGDL 245 Query: 232 SVDVLAKVVSSSPRNFARVFARDARMTPAEFIEGARVDAARVMLESSAAPLKTVAYRCGF 291 S++ LA SPR +RVF ++ + P ++E R++AAR +L+ + A + TV+ CGF Sbjct: 246 SLEALADQACMSPRTLSRVFLQELGVAPGRYVERVRLEAARALLQDAQASIATVSRLCGF 305 Query: 292 RDASHMRVVFQRRLGISAQQYRDNF 316 ++R F + L +S Q+Y + F Sbjct: 306 GHPENLRRTFHKHLSVSPQEYAERF 330 >CC2960 Non COG Length = 312 Score = 197 bits (501), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 124/317 (39%), Positives = 173/317 (54%), Gaps = 21/317 (6%) Query: 4 VALLVFPGVQALDVSGPLDVFAEANRFLLPQQHYHL-----SVVGSTHAPVVCSNGMQIV 58 + LV+PG Q LD +GP+ F A R H ++ ST VV + + Sbjct: 5 IGFLVYPGFQLLDATGPIAAFEIAGRLAPGAYSLHFLSLRGGLIPSTSGMVVQTKALAEA 64 Query: 59 PHLHYSAARENYDLLLAAGGPGLPQQERDALLSDWLAEAAQRAGRHGSICNGAFLLAHAG 118 P L D LL AGG + ++ +A + A R S+C+G ++LA AG Sbjct: 65 PPL---------DTLLIAGGDAVKVPASCPETLAFVRQAGRSARRVASVCSGTYVLAEAG 115 Query: 119 LLNGKRVTTHWNDAAALARDFPEVEVDADRIYLRDGKLVTSAGVTAGIDLSLALLAEDAG 178 LL+GKR TTHW+ R +P V ++ DRI+++DG + +SAG+TAGIDLSLAL+ D G Sbjct: 116 LLDGKRATTHWSRTKDFQRRYPHVRLEPDRIWIQDGAVWSSAGITAGIDLSLALIGADEG 175 Query: 179 QEVALNVAKRLVVFMQRSGGQSQFSPY--LTPYAEETSLVGQVQHYVREHLQEKLSVDVL 236 + VA A++LVV+ R GGQSQ S L P + L + R++L E LSV+ L Sbjct: 176 EAVARRTAQQLVVYHHRPGGQSQHSALIDLRPGRFDGLL-----SWARQNLSEPLSVEQL 230 Query: 237 AKVVSSSPRNFARVFARDARMTPAEFIEGARVDAARVMLESSAAPLKTVAYRCGFRDASH 296 A + SPRNFAR+FA++ +TPA+ IE RV+AAR +L+S ++ VA GF D Sbjct: 231 ADRAAMSPRNFARLFAQETGVTPAKAIERLRVEAARALLDSQPLQVEDVALETGFGDPER 290 Query: 297 MRVVFQRRLGISAQQYR 313 MR F R G Q R Sbjct: 291 MRRAFIRAFGQPPQALR 307 >mll5195 [K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Mlo Mesorhizobium loti Length = 325 Score = 182 bits (462), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 107/285 (37%), Positives = 164/285 (57%), Gaps = 9/285 (3%) Query: 4 VALLVFPGVQALDVSGPLDVFAEANRFLLPQQHYHLSVVGSTHAPVVCSNGMQIVPHLHY 63 V +++ PG Q LD +GP F A F + Y L ++ + S+GM++ Sbjct: 35 VGIIIHPGFQLLDAAGPAAAFELAEGFCV--GSYMLEILAPGGEEIESSSGMRLAAR--P 90 Query: 64 SAARENYDLLLAAGGPGLPQQERDALLSDWLAEAAQRAGRHGSICNGAFLLAHAGLLNGK 123 + E D + +GG + + WL R R S+C GA+LLA AGLL+G+ Sbjct: 91 LSMEEPLDTAIISGGEIIRSMAAAQEIVAWLRRTGVR--RTASVCTGAYLLAEAGLLDGR 148 Query: 124 RVTTHWNDAAALARDFPEVEVDADRIYLRDGKLVTSAGVTAGIDLSLALLAEDAGQEVAL 183 R TTHW AR +P V++DA+RI++RDG + TSAG++AGIDL+LAL+ +D G +A Sbjct: 149 RATTHWWSTHDFARRYPAVKLDAERIFVRDGSVWTSAGISAGIDLALALIEDDLGPAIAR 208 Query: 184 NVAKRLVVFMQRSGGQSQFSPYLTPYAEETSLVGQVQHYVREHLQEKLSVDVLAKVVSSS 243 VA++LVV +R GGQSQFS L T ++ ++R L + L+V+ LA + S Sbjct: 209 RVAQQLVVHQRRPGGQSQFSA-LVELGGRTGRFIELIEWMRTALAQPLTVECLADRAAMS 267 Query: 244 PRNFARVFARDARMTPAEFIEGARVDAARVMLESSAAPLKTVAYR 288 PR+FAR F + TPA+ +E R+++AR+ +E+ AP +++A R Sbjct: 268 PRHFARAFKAETGTTPAKAVERIRLESARIAVET--APCRSIASR 310 >SMb20215 [K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Sme Sinorhizobium meliloti Length = 326 Score = 172 bits (436), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 112/315 (35%), Positives = 170/315 (53%), Gaps = 8/315 (2%) Query: 1 MPTVALLVFPGVQALDVSGPLDVFAEANRFLLPQQHYHLSVVGSTHAPVVCSNGMQIVPH 60 M + +VFP Q + + + F AN L + Y + ++ V S G ++ Sbjct: 12 MHRIGFVVFPRFQLMGFAA-VTAFEMAN-LALGETVYEIELLSEAGGEVKSSAGFGVLTK 69 Query: 61 LHYSAARENYDLLLAAGGPGLPQQERDALLSDWLAEAAQRAGRHGSICNGAFLLAHAGLL 120 A YD ++ G G+ + L ++ + + A R + C GAF+LA +GLL Sbjct: 70 TFDHTA---YDTVMF--GAGVQIEPMTPGLVEFARRSFETARRVAAPCTGAFVLAESGLL 124 Query: 121 NGKRVTTHWNDAAALARDFPEVEVDADRIYLRDGKLVTSAGVTAGIDLSLALLAEDAGQE 180 +G+R TTHW A L FP V+V+ DRI++ DG + TSAG+TA IDL+LA++ +D GQ Sbjct: 125 DGRRATTHWAFARQLQDRFPAVKVEEDRIFIVDGSVWTSAGMTASIDLALAMVEKDYGQG 184 Query: 181 VALNVAKRLVVFMQRSGGQSQFSPYLTPYAEETSLVGQVQHYVREHLQEKLSVDVLAKVV 240 VA +VA++LVV+ +R+GGQSQFS L ++ + + Y + +L+ LSV+ LA Sbjct: 185 VARSVARKLVVYHRRAGGQSQFSALLE-LEPKSDRIQRSIDYAKANLRRGLSVEELADAA 243 Query: 241 SSSPRNFARVFARDARMTPAEFIEGARVDAARVMLESSAAPLKTVAYRCGFRDASHMRVV 300 S R F+R F + +PA+ +E RV+AAR+M+E + +A GF A MR Sbjct: 244 GLSARQFSRAFRAETGQSPAKAVETLRVEAARLMMEQGRHSMDVIAEETGFAIADRMRRA 303 Query: 301 FQRRLGISAQQYRDN 315 F R LG Q R N Sbjct: 304 FLRTLGQPPQTIRRN 318 >mll3844 [K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Mlo Mesorhizobium loti Length = 332 Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 92/264 (34%), Positives = 138/264 (52%), Gaps = 14/264 (5%) Query: 73 LLAAGGPGLPQQERDALLSDW--------------LAEAAQRAGRHGSICNGAFLLAHAG 118 ++A GGP L + ++ W L A++R R SIC+G F+LA AG Sbjct: 68 IVADGGPDLIGEAGTVIVPGWRGVDCPVPPLLIEALRAASERGARILSICSGVFVLAAAG 127 Query: 119 LLNGKRVTTHWNDAAALARDFPEVEVDADRIYLRDGKLVTSAGVTAGIDLSLALLAEDAG 178 LL+GK+ TTHW + L +P++ V D +Y+ +G ++TSAG AGIDL L L+ D G Sbjct: 128 LLSGKKATTHWRYSDRLREMYPDITVVPDVLYIDEGNVLTSAGSAAGIDLCLHLVRRDFG 187 Query: 179 QEVALNVAKRLVVFMQRSGGQSQFSPYLTPYAEETSLVGQVQHYVREHLQEKLSVDVLAK 238 + A VA+RLVV R GGQ+Q+ P E +G + +R + V LA Sbjct: 188 TKAANMVARRLVVPPHRDGGQAQYVESSVPEPHERGRLGPLIDRMRADIAADYPVATLAD 247 Query: 239 VVSSSPRNFARVFARDARMTPAEFIEGARVDAARVMLESSAAPLKTVAYRCGFRDASHMR 298 + S R F R FA +TPA ++ R+ AR +LE +A P++ +A GF A+ +R Sbjct: 248 LAGMSERTFLRRFAAATGVTPARWLLSERLSRARTLLEDTALPIERIAETAGFGAAATLR 307 Query: 299 VVFQRRLGISAQQYRDNFSAGADA 322 F+R+ + YR F A++ Sbjct: 308 HHFRRQFATTPAAYRARFGTNANS 331