BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0157.p         (193 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2314 [G] COG2814 Arabinose efflux permease Pae Pseudomonas aer...   132   7e-31
XF1728 [G] COG2814 Arabinose efflux permease Xfa Xylella fastidi...   106   3e-23
mll3374 Non COG                                                        70   3e-12
AGl2058 [G] COG2814 Arabinose efflux permease Atu Agrobacterium ...    64   2e-10
SMb20625 [G] COG2814 Arabinose efflux permease Sme Sinorhizobium...    62   5e-10

>PA2314 [G] COG2814 Arabinose efflux permease Pae Pseudomonas aeruginosa
          Length = 417

 Score =  132 bits (331), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 91/163 (55%), Positives = 113/163 (69%)

Query: 10  PGVRSVLFVTLAFVLAHNILYTYIAPFLARAGMADKVGAILLIFGVSALASIWVTGALID 69
           PGVR VL V +A+VLAHNILYTYIAPFLA+ G+   V   LL+FG +A+A IW+ G L+D
Sbjct: 221 PGVRPVLLVIVAWVLAHNILYTYIAPFLAKVGLGASVDLALLVFGSAAVAGIWLVGVLVD 280

Query: 70  RRLRTLVLISIVLFGFAAATLGIWGSAPAMVYAGVAAWGLAYGGVPTLFQTASAKNAGDA 129
           R LR +VL S+ LF  AA  L +      + +AG+A WGL +GG  TL QTASA  AG+ 
Sbjct: 281 RHLRRMVLASLALFAVAALALCLGARWSWLAFAGLALWGLTFGGAATLLQTASADAAGEG 340

Query: 130 ADLAQAMIVTVWNLAIAGGGIVGGVLLDTVGVASFPWALLALL 172
           ADLAQ+MIV  WNLAIAGGG +GG++L   G    PW LL L+
Sbjct: 341 ADLAQSMIVVAWNLAIAGGGALGGMVLQRWGSEMLPWTLLPLI 383


>XF1728 [G] COG2814 Arabinose efflux permease Xfa Xylella fastidiosa 9a5c
          Length = 447

 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/193 (42%), Positives = 112/193 (58%), Gaps = 4/193 (2%)

Query: 1   LSITGVFMLPGVRSVLFVTLAFVLAHNILYTYIAPFLARAGMADKVGAILLIFGVSALAS 60
           +SI  V    GVRS+LF  LA+V A  +LYTYIA F    G +  V  +LL FGV+A+  
Sbjct: 255 ISIGSVLGSAGVRSILFTALAWVTAQYMLYTYIAVFAGTLGRSADVDLLLLAFGVAAIVG 314

Query: 61  IWVTGALIDRRLRTLVLISIVLFGFAAATLGIWGSAPAMVYA--GVAAWGLAYGGVPTLF 118
           IW+ G ++DR LR  V+ S+VLF   A TL     A A ++A   +  WG ++GG  T  
Sbjct: 315 IWLAGVMVDRHLRLHVIGSLVLF--VAVTLVFTSPASAALFAVPAMMLWGASFGGAATSI 372

Query: 119 QTASAKNAGDAADLAQAMIVTVWNLAIAGGGIVGGVLLDTVGVASFPWALLALLAPTLAV 178
           QTA++  AG+  D+  AM+ TVWN  IA GG +G ++L   G +  P ++L L+   LA 
Sbjct: 373 QTAASDAAGEGVDIVGAMLTTVWNAGIAAGGALGALVLARGGASVLPASMLPLILVALAT 432

Query: 179 AWLARRKGFPAAA 191
           A   RR GF A A
Sbjct: 433 ALACRRHGFKAGA 445


>mll3374 Non COG
          Length = 404

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 2/165 (1%)

Query: 1   LSITGVFMLPGVRSVLFVTLAFVLAHNILYTYIAPFLARAGM--ADKVGAILLIFGVSAL 58
           L++  V   P +R  L V L     H   +TY+ PFL +  +   + +  +LL +G+   
Sbjct: 215 LTLLDVLKRPSIRVALLVVLLVASGHFAGFTYVRPFLEKVPVLHIETISLVLLAYGIGGF 274

Query: 59  ASIWVTGALIDRRLRTLVLISIVLFGFAAATLGIWGSAPAMVYAGVAAWGLAYGGVPTLF 118
                 G L +R L+  V ++ +L   AAA++ I+G +P +  A V AWG A+G VP   
Sbjct: 275 FGNIAGGFLAERNLKIAVALAPLLIALAAASMLIFGPSPTIAAAAVTAWGFAFGAVPVGL 334

Query: 119 QTASAKNAGDAADLAQAMIVTVWNLAIAGGGIVGGVLLDTVGVAS 163
           Q+   + A D A+ A  ++V  + +AIA G + GG+L+D  GVAS
Sbjct: 335 QSWLVRAAPDQAESAGGLMVATFQVAIALGAVFGGLLVDHAGVAS 379


>AGl2058 [G] COG2814 Arabinose efflux permease Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 402

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 5/164 (3%)

Query: 2   SITGVFML---PGVRSVLFVTLAFVLAHNILYTYIAPFLARAGMADK--VGAILLIFGVS 56
           S+  VF L   P V+  +   L  +  H     Y+ PFL +    D   +   LL FGV+
Sbjct: 214 SLADVFRLTRRPSVQLGMLAILLLMTGHFAGSVYVRPFLEQVTHLDTTPIALALLGFGVA 273

Query: 57  ALASIWVTGALIDRRLRTLVLISIVLFGFAAATLGIWGSAPAMVYAGVAAWGLAYGGVPT 116
           ++      G + D  +R  + ++  L GFA   L  WG+  +  +A VA WG A+G  P 
Sbjct: 274 SVLGNVAGGRMADNSIRLALAVTAALMGFATLFLVFWGAHTSAAFALVALWGFAFGMAPV 333

Query: 117 LFQTASAKNAGDAADLAQAMIVTVWNLAIAGGGIVGGVLLDTVG 160
           +  T  ++ A DA + A +++V  + +AI+ G + GG ++D  G
Sbjct: 334 VLPTNLSRGAPDALEAAGSLMVVSFQVAISIGAVFGGYIVDYYG 377


>SMb20625 [G] COG2814 Arabinose efflux permease Sme Sinorhizobium meliloti
          Length = 401

 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 2/154 (1%)

Query: 9   LPGVRSVLFVTLAFVLAHNILYTYIAPFLARAGM--ADKVGAILLIFGVSALASIWVTGA 66
           +P +R  +   L FV  H   +TY+ PFL        + +  ILL +G          G 
Sbjct: 220 MPSIRIGIITVLLFVSGHFAGFTYVRPFLENVPEFGIEAISLILLAYGTGGFFGNLAGGL 279

Query: 67  LIDRRLRTLVLISIVLFGFAAATLGIWGSAPAMVYAGVAAWGLAYGGVPTLFQTASAKNA 126
           +I+R +   V I  +L    A  L  +GS   +    V  WG A+G +P   QT   + A
Sbjct: 280 IIERSITAAVSIGTLLIAAMAFALVTFGSFDVVSAVAVTLWGFAFGALPVAVQTWMVRAA 339

Query: 127 GDAADLAQAMIVTVWNLAIAGGGIVGGVLLDTVG 160
            D A+    +IV  + + IA G ++GG+ +D+ G
Sbjct: 340 PDHAESTGGLIVATFQVGIASGAVLGGLFVDSFG 373