BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0156.p (248 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value XF1728 [G] COG2814 Arabinose efflux permease Xfa Xylella fastidi... 188 9e-48 PA2314 [G] COG2814 Arabinose efflux permease Pae Pseudomonas aer... 155 9e-38 BH2116 [G] COG2814 Arabinose efflux permease Bha Bacillus halodu... 99 7e-21 AGl1145 [G] COG2814 Arabinose efflux permease Atu Agrobacterium ... 97 4e-20 Z0348 [G] COG2814 Arabinose efflux permease EcZ Escherichia coli... 91 2e-18 >XF1728 [G] COG2814 Arabinose efflux permease Xfa Xylella fastidiosa 9a5c Length = 447 Score = 188 bits (478), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 101/199 (50%), Positives = 135/199 (67%), Gaps = 3/199 (1%) Query: 39 PHPANSTISQTAGKLPLAGLLALAMAAFITVLTEAMPAGLLPQMSADLGVSESLIGQLVT 98 P PA+S + T LP A LL LAM FI ++TE +PAGLLPQ++ DL + + GQ+VT Sbjct: 54 PIPASSAEADT---LPTAALLMLAMTGFIAIVTETLPAGLLPQIAQDLAIPATAAGQMVT 110 Query: 99 LYAIGSMITAIPLTATTQSWRRKPLLMTAIVGFVIVNTITAVSTSYPLTLAARFFAGVFA 158 +YA GS++ AIPL + TQ+ RRKP+LM A+ GF+ N +TA S + LTL ARF AGV A Sbjct: 111 VYAAGSLLAAIPLVSLTQTRRRKPVLMLALAGFLFFNLVTAFSPWFALTLVARFLAGVSA 170 Query: 159 GVVWALIAGYAARMAPSHLQGRAIAVTMAGIPIALSLGIPAATFLGASVGWRLSFGIMSA 218 G+ W L+ GYA RM L+GRA+AV M G P+ALS+G+P TF G +GWR +F +S Sbjct: 171 GLSWGLLGGYARRMVVDRLKGRALAVAMVGTPLALSIGVPLGTFTGGIIGWRGAFVSLSV 230 Query: 219 MTLILIVWTIARVPDFPGQ 237 + +L+V R+PD PGQ Sbjct: 231 VAALLLVAMAWRMPDVPGQ 249 >PA2314 [G] COG2814 Arabinose efflux permease Pae Pseudomonas aeruginosa Length = 417 Score = 155 bits (392), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 100/186 (53%), Positives = 140/186 (75%) Query: 52 KLPLAGLLALAMAAFITVLTEAMPAGLLPQMSADLGVSESLIGQLVTLYAIGSMITAIPL 111 +LPL+ LLA+AM+ F+ +L+E +PAGLLPQ+ A L VSE+L GQLV++YA+GS++ A+P Sbjct: 21 RLPLSALLAMAMSGFVAILSETLPAGLLPQIGAGLAVSEALAGQLVSVYALGSLLAALPA 80 Query: 112 TATTQSWRRKPLLMTAIVGFVIVNTITAVSTSYPLTLAARFFAGVFAGVVWALIAGYAAR 171 + TQ WRR+ +L+ A++ F + N+ TAVS+ Y LTL ARF +GV AG+ W L+AGYA R Sbjct: 81 ASLTQGWRRRRVLLLALLIFFVCNSFTAVSSDYRLTLLARFGSGVAAGLAWGLLAGYARR 140 Query: 172 MAPSHLQGRAIAVTMAGIPIALSLGIPAATFLGASVGWRLSFGIMSAMTLILIVWTIARV 231 + P QGRA+AV M G P+ALSLG+P T+LG +GWR +FG++S L+L+ W + V Sbjct: 141 LVPPEQQGRALAVAMLGAPLALSLGVPLGTWLGGLLGWRWAFGLLSLTALLLVGWVLRSV 200 Query: 232 PDFPGQ 237 PDFPGQ Sbjct: 201 PDFPGQ 206 >BH2116 [G] COG2814 Arabinose efflux permease Bha Bacillus halodurans Length = 286 Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 97/173 (56%) Query: 61 LAMAAFITVLTEAMPAGLLPQMSADLGVSESLIGQLVTLYAIGSMITAIPLTATTQSWRR 120 L++ AF+T E + +G+L +S DLGVS + GQL+T+Y++ A+ L T + R Sbjct: 13 LSLGAFVTGTAEFVFSGILEIISLDLGVSIAAAGQLLTMYSLSYAAGALILVLLTAKYNR 72 Query: 121 KPLLMTAIVGFVIVNTITAVSTSYPLTLAARFFAGVFAGVVWALIAGYAARMAPSHLQGR 180 K +LM AI F+I N I VS SY L + +R + G+ + YAA++ +G Sbjct: 73 KKVLMYAIFTFLIGNLIAFVSYSYSLLMFSRVVMAMSGGLYIVVATNYAAQIVSPEKRGS 132 Query: 181 AIAVTMAGIPIALSLGIPAATFLGASVGWRLSFGIMSAMTLILIVWTIARVPD 233 AIA + G ++L LG+P TF A V WR F I++ ++L LI+ +P+ Sbjct: 133 AIAKIITGFTVSLVLGVPIGTFFSAYVDWRYIFLIIALISLFLIISLYKLLPE 185 >AGl1145 [G] COG2814 Arabinose efflux permease Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 431 Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 113/211 (53%), Gaps = 5/211 (2%) Query: 23 SSTCSNPDTPAPASARPHPANSTISQTAGKLPLAGLLALAMAAFITVLTEAMPAGLLPQM 82 +S PD+ +A P +S +PLA + AL +AA+ TE + GLLP + Sbjct: 13 ASQQFQPDS----NAVPATLTRAVSGEEPVMPLA-IFALTIAAYAIGTTEFVIVGLLPTV 67 Query: 83 SADLGVSESLIGQLVTLYAIGSMITAIPLTATTQSWRRKPLLMTAIVGFVIVNTITAVST 142 + DL ++ L G +V++YA+G A LTA T RKPLL+ + F++ NT A+S Sbjct: 68 ANDLHITLPLAGLIVSVYALGVTFGAPILTALTGRIERKPLLLGLMALFIVGNTAAALSP 127 Query: 143 SYPLTLAARFFAGVFAGVVWALIAGYAARMAPSHLQGRAIAVTMAGIPIALSLGIPAATF 202 SY + L AR A GV +++ A AA + P + + AIA+ G+ +A+ G+P T+ Sbjct: 128 SYEMLLVARVIAAFAHGVFFSVGATIAADLVPENRRASAIAMMFMGLTVAIVTGVPIGTY 187 Query: 203 LGASVGWRLSFGIMSAMTLILIVWTIARVPD 233 +G GWR +F + A+ ++ V +P+ Sbjct: 188 IGQIFGWRATFWAVGALGIVAFVAIAVLLPN 218 >Z0348 [G] COG2814 Arabinose efflux permease EcZ Escherichia coli O157:H7 EDL933 Length = 397 Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 101/194 (52%), Gaps = 4/194 (2%) Query: 44 STISQT----AGKLPLAGLLALAMAAFITVLTEAMPAGLLPQMSADLGVSESLIGQLVTL 99 ST+SQT G+ A+ + F+ + +E MP LL ++ DLGV+E L G+ + + Sbjct: 2 STLSQTPSPHHQHAYWGGIFAMTLCVFVLIASEFMPVSLLTPIARDLGVTEGLAGRGIAI 61 Query: 100 YAIGSMITAIPLTATTQSWRRKPLLMTAIVGFVIVNTITAVSTSYPLTLAARFFAGVFAG 159 +++T++ L+ RK LL+ V + I A++TSY + + R GV G Sbjct: 62 SGALAVLTSLTLSTLAGKMNRKFLLLGMTVLMAVSGLIIALATSYLMYMVGRAMIGVAIG 121 Query: 160 VVWALIAGYAARMAPSHLQGRAIAVTMAGIPIALSLGIPAATFLGASVGWRLSFGIMSAM 219 W++ A A R+ P H RA+A+ AG +A + P ++LGA+VGWR +F + M Sbjct: 122 GFWSMSAATAIRLVPQHQVTRALAIFNAGNALATVVAAPLGSYLGATVGWRGAFLCLVPM 181 Query: 220 TLILIVWTIARVPD 233 ++ +W +P Sbjct: 182 AVVAFIWQCISLPS 195