BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0137.p         (139 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0270 [S] COG1917 Uncharacterized conserved protein, contains d...   124   6e-29
SMb20864 [S] COG1917 Uncharacterized conserved protein, contains...    84   8e-17
mlr0979 Non COG                                                        82   3e-16
SMb20700 [S] COG1917 Uncharacterized conserved protein, contains...    81   5e-16
AGl1124 [S] COG1917 Uncharacterized conserved protein, contains ...    77   7e-15

>PA0270 [S] COG1917 Uncharacterized conserved protein, contains
           double-stranded beta-helix domain Pae Pseudomonas
           aeruginosa
          Length = 135

 Score =  124 bits (311), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 58/111 (52%), Positives = 76/111 (68%)

Query: 29  HGDEVVTPLQHQALSDAPGKSGVMAVVAYGPGQSSVAHRHPGSIFAYVLEGEVVSQLQGG 88
           H  E V  L  QAL++ PG  G+M  V++ PGQ S  H HPGS+F YVLEG V +QL+GG
Sbjct: 22  HVAEKVETLHDQALAEIPGHRGLMLTVSFKPGQVSAPHVHPGSVFVYVLEGTVQTQLEGG 81

Query: 89  APVTYKAGESWYEAPDTPHLVSRNASATKPAKLLVWSLVQDGKPLTVPLEK 139
           +  TY  G+SWYE  + PHL++RN    KPAKLLVW L+++G P+  PLE+
Sbjct: 82  SVETYTVGQSWYEPANVPHLLARNPDPMKPAKLLVWELLKEGDPILKPLER 132


>SMb20864 [S] COG1917 Uncharacterized conserved protein, contains
           double-stranded beta-helix domain Sme Sinorhizobium
           meliloti
          Length = 141

 Score = 84.0 bits (206), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 58/133 (43%), Positives = 74/133 (55%), Gaps = 6/133 (4%)

Query: 13  IVLLAMVA-SAGAHDGKHGDE--VVTPLQHQALSDAPGKSGVMAVVAYGPGQSSVAHRHP 69
           +VL A+++ +A AHD   GDE   VT +    L + PGKS    +V Y PG  S  H HP
Sbjct: 9   VVLAALLSGTALAHDSSGGDEGAKVTLVYEHELPNVPGKSVKGVLVEYAPGGFSEGHTHP 68

Query: 70  GSIFAY--VLEGEVVSQLQGGAPVTYKAGESWYEAPDTPHLVSRNASATKPAKLLVWSLV 127
            S F Y  VLEG + SQ+  G    Y AGES+ E P   H VS N S TKPAKLL   +V
Sbjct: 69  VSAFIYATVLEGAIRSQVNDGPVTVYSAGESFSELPGDRHGVSENTSTTKPAKLLAVFVV 128

Query: 128 QDGK-PLTVPLEK 139
              +  LT P+++
Sbjct: 129 DTAETELTFPIKE 141


>mlr0979 Non COG
          Length = 138

 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/117 (44%), Positives = 68/117 (58%), Gaps = 4/117 (3%)

Query: 15  LLAMVASAGAHDGK-HGDEVVTPLQHQALSDAPGKSGVMAVVAYGPGQSSVAHRHPGS-- 71
           + A +A+  A  G+ HGD+      H  + + PGKS    +V Y PG +S  H HP S  
Sbjct: 11  IAASLATGSAQAGQSHGDKATLIYDHP-VPNVPGKSMRAVLVEYEPGGTSAGHTHPRSAF 69

Query: 72  IFAYVLEGEVVSQLQGGAPVTYKAGESWYEAPDTPHLVSRNASATKPAKLLVWSLVQ 128
           IFA VLEG + SQ+  G   TY+AGES+ E P   H VS NASA++PAKLL   +V 
Sbjct: 70  IFATVLEGAIRSQVNDGPVTTYRAGESFSEFPGDRHGVSENASASEPAKLLAVFVVD 126


>SMb20700 [S] COG1917 Uncharacterized conserved protein, contains
           double-stranded beta-helix domain Sme Sinorhizobium
           meliloti
          Length = 137

 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/139 (41%), Positives = 73/139 (52%), Gaps = 10/139 (7%)

Query: 2   RFISTAKSALLIVLLAMVASAGAHDGKHGDEVVTPLQHQALSDAPGKSGVMAVVAYGPGQ 61
           RF+S        V LA ++   A  G      VT +   AL + PGKS    +V Y PG 
Sbjct: 4   RFLSA-------VALAALSFTAASAGDRPAGKVTVVFDHALPNVPGKSMRGVLVEYSPGG 56

Query: 62  SSVAHRHPGSIFAY--VLEGEVVSQLQGGAPVTYKAGESWYEAPDTPHLVSRNASATKPA 119
            S AH HP S F Y  VLEG + S + G     Y+ GE++YE P + H VS NAS T+PA
Sbjct: 57  GSPAHTHPKSAFIYATVLEGAIRSSVNGSPEKVYQVGENFYEDPGSQHEVSANASDTEPA 116

Query: 120 KLL-VWSLVQDGKPLTVPL 137
           +LL V+ L  D   LT P+
Sbjct: 117 RLLAVFVLDTDETELTTPV 135


>AGl1124 [S] COG1917 Uncharacterized conserved protein, contains
           double-stranded beta-helix domain Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 137

 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 24  AHDGKHGDEVVTPLQHQALSDAPGKSGVMAVVAYGPGQSSVAHRHPGSIFAY--VLEGEV 81
           AHD   G+ V   +  Q L + PGKS    +V Y PG +S AH HP S F Y  VLEG +
Sbjct: 21  AHDTNSGENVKV-VYDQPLPNVPGKSLKGVLVEYAPGGTSPAHTHPNSAFIYATVLEGAI 79

Query: 82  VSQLQGGAPVTYKAGESWYEAPDTPHLVSRNASATKPAKLLVWSLVQDGKPLTVPLEK 139
            SQ+  G    Y AGE++ E P   H VS NAS T+ A+LL   +V   +      EK
Sbjct: 80  TSQVNNGPVTVYHAGENFSEYPGDHHAVSENASKTERARLLAVFVVDTNETNLTVYEK 137